Human EXOG possesses strong AP hydrolysis activity
Szymanski, M.R., Yin, Y.W.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Nuclease EXOG, mitochondrial | A [auth D], B [auth E], G, H [auth I] | 311 | Homo sapiens | Mutation(s): 0  Gene Names: EXOG, ENDOGL1, ENDOGL2, ENGL EC: 3.1.30 | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9Y2C4 (Homo sapiens) Explore Q9Y2C4  Go to UniProtKB:  Q9Y2C4 | |||||
PHAROS:  Q9Y2C4 GTEx:  ENSG00000157036  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9Y2C4 | ||||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 2 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (5'-D(*CP*TP*GP*AP*CP*GP*TP*GP*CP*G)-3') | C [auth F], D [auth H], I [auth J], J [auth K] | 10 | synthetic construct | ||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 3 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (5'-D(*CP*GP*CP*AP*CP*GP*TP*CP*AP*GP*AP*A)-3') | E [auth B], F [auth A], K [auth L], L [auth M] | 12 | synthetic construct | ||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SO4 Query on SO4 | N [auth D], Q [auth G], T [auth I] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
MG (Subject of Investigation/LOI) Query on MG | M [auth D] O [auth F] P [auth H] R [auth I] S [auth I] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 73.749 | α = 69.05 |
b = 79.085 | β = 65.02 |
c = 79.635 | γ = 89.72 |
Software Name | Purpose |
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PHENIX | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
PHENIX | phasing |