7R5Y | pdb_00007r5y

Crystal Structure of Prevotella sp. CAG:617 Multiple Inositol Polyphosphate Phosphatase, complex with myo-inositol hexakissulfate

PDB DOI: https://doi.org/10.2210/pdb7R5Y/pdb

Classification: HYDROLASE
Organism(s): Prevotella sp. CAG:617
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2022-02-12 Released: 2022-05-18
Deposition Author(s): Acquistapace, I.M., Brearley, C.A., Hemmings, A.M.
Funding Organization(s): Biotechnology and Biological Sciences Research Council (BBSRC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.97 Å
R-Value Free:
0.220 (Depositor), 0.220 (DCC)
R-Value Work:
0.152 (Depositor), 0.150 (DCC)
R-Value Observed:
0.155 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Crystal Structure of Prevotella sp. CAG:617 Multiple Inositol Polyphosphate Phosphatase, complex with myo-inositol hexakissulfate

Acquistapace, I.M., Brearley, C.A., Hemmings, A.M.

To be published.

Macromolecule Content

Total Structure Weight: 289.5 kDa
Atom Count: 22,088
Modeled Residue Count: 2,465
Deposited Residue Count: 2,496
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Histidine acid phosphatase	A, B, C, D, E A, B, C, D, E, F	416	Prevotella sp. CAG:617	Mutation(s): 0 Gene Names: BN736_00172
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
IHS (Subject of Investigation/LOI) Query on IHS Download Ideal Coordinates CCD File SDF format, chain M [auth F] SDF format, chain L [auth E] SDF format, chain K [auth D] SDF format, chain J [auth C] SDF format, chain I [auth B] SDF format, chain G [auth A] MOL2 format, chain M [auth F] MOL2 format, chain L [auth E] MOL2 format, chain K [auth D] MOL2 format, chain J [auth C] MOL2 format, chain I [auth B] MOL2 format, chain G [auth A] mmCIF format, chain M [auth F] mmCIF format, chain L [auth E] mmCIF format, chain K [auth D] mmCIF format, chain J [auth C] mmCIF format, chain I [auth B] mmCIF format, chain G [auth A]	G [auth A] I [auth B] J [auth C] K [auth D] L [auth E] G [auth A], I [auth B], J [auth C], K [auth D], L [auth E], M [auth F]	D-MYO-INOSITOL-HEXASULPHATE C₆ H₁₂ O₂₄ S₆ NBTMNFYXJYCQHQ-GPIVLXJGSA-N		Interactions Focus chain G [auth A] Focus chain I [auth B] Focus chain J [auth C] Focus chain K [auth D] Focus chain L [auth E] Focus chain M [auth F] Interactions & Density Focus chain G [auth A] Focus chain I [auth B] Focus chain J [auth C] Focus chain K [auth D] Focus chain L [auth E] Focus chain M [auth F]
SO4 Query on SO4 Download Ideal Coordinates CCD File SDF format, chain H [auth A] MOL2 format, chain H [auth A] mmCIF format, chain H [auth A]	H [auth A]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain H [auth A] Interactions & Density Focus chain H [auth A]