7R5A

Vibrio cholera ParD2:ParE2 antitoxin:toxin complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 0.308 
  • R-Value Work: 0.263 
  • R-Value Observed: 0.268 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Vibrio cholerae ParE2 toxin modulates its operon transcription by stabilization of an antitoxin DNA ruler

Garcia-Rodriguez, G.Girardin, Y.Kumar Singh, R.Volkov, A.N.Van Dyck, J.Muruganandam, G.Sobott, F.Charlier, D.Loris, R.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
ToxinA105Vibrio cholerae O1 biovar El Tor str. N16961Mutation(s): 0 
Gene Names: VC_A0359
UniProt
Find proteins for Q9KMJ0 (Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961))
Explore Q9KMJ0 
Go to UniProtKB:  Q9KMJ0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9KMJ0
Protein Feature View
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Antitoxin ParDB, C, D80Vibrio cholerae O1 biovar El Tor str. N16961Mutation(s): 0 
Gene Names: parDVC_A0360.1
UniProt
Find proteins for P58093 (Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961))
Explore P58093 
Go to UniProtKB:  P58093
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP58093
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 0.308 
  • R-Value Work: 0.263 
  • R-Value Observed: 0.268 
  • Space Group: P 43 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 65.78α = 90
b = 65.78β = 90
c = 127.44γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2022-04-27
    Type: Initial release