Download MendeleyCrystal structure of the GPVI-glenzocimab complex
Billiald, P., Slater, A., Pugniere, M., Jiacomini, I.G., Welin, M., Rose, N., Toledano, E., Francois, D., Watson, S.P., Jandrot-Perrus, M.To be published.
7R58
Crystal structure of the GPVI-glenzocimab complex
- PDB DOI: 10.2210/pdb7R58/pdb
- Classification: BLOOD CLOTTING
- Organism(s): Homo sapiens, Mus musculus
- Expression System: Escherichia coli, Cricetulus griseus
- Mutation(s): No
- Deposited: 2022-02-10 Released: 2022-11-16
- Funding Organization(s): Not funded
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.232
- R-Value Work: 0.186
- R-Value Observed: 0.189
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Platelet glycoprotein VI | A | 204 | Homo sapiens | Mutation(s): 0 Gene Names: GP6 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9HCN6 (Homo sapiens) Explore Q9HCN6 Go to UniProtKB: Q9HCN6 | |||||
PHAROS: Q9HCN6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9HCN6 | ||||
Protein Feature ViewExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Fab heavy chain | B [auth H] | 227 | Mus musculus | Mutation(s): 0 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Protein Feature ViewExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Fab light chain | C [auth L] | 219 | Mus musculus | Mutation(s): 0 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | D [auth A], E [auth A], I [auth H], J [auth H], K [auth H], | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
| SCN Query on SCN | H [auth A] | THIOCYANATE ION C N S ZMZDMBWJUHKJPS-UHFFFAOYSA-M |  | Ligand Interaction | |
| CL Query on CL | F [auth A], G [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.232
- R-Value Work: 0.186
- R-Value Observed: 0.189
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 68.669 | α = 90 |
| b = 93.195 | β = 90 |
| c = 110.42 | γ = 90 |
| Software Name | Purpose |
|---|---|
| BUSTER | refinement |
| XDS | data reduction |
| Aimless | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2022-11-16 Deposition Author(s): Jandrot-Perrus, M., Lebozec, K., Rose, N., Welin, M., Billiald, P.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Not funded | -- |
Revision History (Full details and data files)
- Version 1.0: 2022-11-16
Type: Initial release
