Structure of P. gingivalis DPP11 in complex with the dipeptide Arg-Asp
Tham, C.T., Coker, J.A., Foster, W.R., Ohara-Nemoto, Y., Nemoto, T.K., Yue, W.W., Bountra, C., Bezerra, G.A.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Asp/Glu-specific dipeptidyl-peptidase | 707 | Porphyromonas gingivalis | Mutation(s): 0  Gene Names: dpp11, PGN_0607 EC: 3.4.14 | ||
UniProt | |||||
Find proteins for B2RID1 (Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / CIP 103683 / JCM 12257 / NCTC 11834 / 2561)) Explore B2RID1  Go to UniProtKB:  B2RID1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | B2RID1 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
ARG-ASP | 2 | Porphyromonas gingivalis | Mutation(s): 0  | ||
Sequence AnnotationsExpand | |||||
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Length ( Å ) | Angle ( ˚ ) |
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a = 193.428 | α = 90 |
b = 72.908 | β = 91.88 |
c = 119.368 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
PDB_EXTRACT | data extraction |
autoPROC | data reduction |
STARANISO | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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Other private | United Kingdom | 0006369 |