7R4B | pdb_00007r4b

The Bacillus pumilus chorismate mutase

PDB DOI: https://doi.org/10.2210/pdb7R4B/pdb

Classification: ISOMERASE
Organism(s): Bacillus pumilus
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2022-02-08 Released: 2023-02-22
Deposition Author(s): Lund, B.A.
Funding Organization(s): Research Council of Norway

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.10 Å
R-Value Free:
0.197 (Depositor), 0.190 (DCC)
R-Value Work:
0.182 (Depositor), 0.180 (DCC)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

The Bacillus pumilus chorismate mutase

Wilkins, R., Lund, B.A., Isaksen, G.V., Brandsdal, B.O., Aqvist, J.

To be published.

Macromolecule Content

Total Structure Weight: 92.35 kDa
Atom Count: 6,723
Modeled Residue Count: 711
Deposited Residue Count: 798
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Chorismate mutase AroH	A, B, C, D, E A, B, C, D, E, F	133	Bacillus pumilus	Mutation(s): 0 Gene Names: BPUM_2000 EC: 5.4.99.5
UniProt
Find proteins for A8FEK3 (Bacillus pumilus (strain SAFR-032)) Explore A8FEK3 Go to UniProtKB: A8FEK3
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A8FEK3
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
EDO Query on EDO Download Ideal Coordinates CCD File SDF format, chain G [auth E] MOL2 format, chain G [auth E] mmCIF format, chain G [auth E]	G [auth E]	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Interactions Focus chain G [auth E] Interactions & Density Focus chain G [auth E]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.10 Å
R-Value Free: 0.197 (Depositor), 0.190 (DCC)
R-Value Work: 0.182 (Depositor), 0.180 (DCC)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 49.898	α = 90
b = 94.864	β = 107.487
c = 77.305	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2023-02-22

Deposition Author(s):

Funding Organization	Location	Grant Number
Research Council of Norway	Norway	262695
Research Council of Norway	Norway	274858

Revision History (Full details and data files)

Version 1.0: 2023-02-22
Type: Initial release
Version 1.1: 2024-02-07
Changes: Data collection, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.