7QXJ | pdb_00007qxj

Solution structure of Tk-hefu-11


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the least restraint violations 

wwPDB Validation 3D Report Full Report

Validation slider image for 7QXJ

This is version 1.2 of the entry. See complete history

Literature

Artificial pore blocker acts specifically on voltage-gated potassium channel isoform K V 1.6.

Gigolaev, A.M.Lushpa, V.A.Pinheiro-Junior, E.L.Tabakmakher, V.M.Peigneur, S.Ignatova, A.A.Feofanov, A.V.Efremov, R.G.Mineev, K.S.Tytgat, J.Vassilevski, A.A.

(2022) J Biological Chem 298: 102467-102467

  • DOI: https://doi.org/10.1016/j.jbc.2022.102467
  • Primary Citation Related Structures: 
    7QXJ

  • PubMed Abstract: 

    Among voltage-gated potassium channel (K V ) isoforms, K V 1.6 is one of the most widespread in the nervous system. However, there are little data concerning its physiological significance, in part due to the scarcity of specific ligands. The known high-affinity ligands of K V 1.6 lack selectivity, and conversely, its selective ligands show low affinity. Here, we present a designer peptide with both high affinity and selectivity to K V 1.6. Previously, we have demonstrated that K V isoform-selective peptides can be constructed based on the simplistic α-hairpinin scaffold, and we obtained a number of artificial Tk-hefu peptides showing selective blockage of K V 1.3 in the submicromolar range. We have now proposed amino acid substitutions to enhance their activity. As a result, we have been able to produce Tk-hefu-11 that shows an EC 50 of ≈70 nM against K V 1.3. Quite surprisingly, Tk-hefu-11 turns out to block K V 1.6 with even higher potency, presenting an EC 50 of ≈10 nM. Furthermore, we have solved the peptide structure and used molecular dynamics to investigate the determinants of selective interactions between artificial α-hairpinins and K V channels to explain the dramatic increase in K V 1.6 affinity. Since K V 1.3 is not highly expressed in the nervous system, we hope that Tk-hefu-11 will be useful in studies of K V 1.6 and its functions.


  • Organizational Affiliation
    • Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Moscow, Russia.

Macromolecule Content 

  • Total Structure Weight: 3.65 kDa 
  • Atom Count: 250 
  • Modeled Residue Count: 28 
  • Deposited Residue Count: 28 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Tk-hefu-1128synthetic constructMutation(s): 0 

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the least restraint violations 

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Russian Science FoundationRussian Federation20-44-01015

Revision History  (Full details and data files)

  • Version 1.0: 2022-09-21
    Type: Initial release
  • Version 1.1: 2022-11-16
    Changes: Database references
  • Version 1.2: 2024-10-23
    Changes: Data collection, Database references, Structure summary