7QQJ

Sucrose phosphorylase from Jeotgalibaca ciconiae

• PDB DOI: https://doi.org/10.2210/pdb7QQJ/pdb

• Classification: TRANSFERASE
• Organism(s): Jeotgalibaca ciconiae
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2022-01-08 Released: 2023-01-18 
• Deposition Author(s): Ubiparip, Z., Capra, N., Rozeboom, H.J., Desmet, T., Thunnissen, A.M.W.H.
• Funding Organization(s): European Commission

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.05 Å
• R-Value Free: 0.254 
• R-Value Work: 0.196 

Literature

Sucrose phosphorylase from Jeotgalibaca ciconiae

Ubiparip, Z., Capra, N., Rozeboom, H.J., Thunnissen, A.M.W.H., Desmet, T.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 112.03 kDa 
• Atom Count: 8,192 
• Modelled Residue Count: 946 
• Deposited Residue Count: 952 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Sucrose phosphorylase	A, B	476	Jeotgalibaca ciconiae	Mutation(s): 0  Gene Names: gtfA, EJN90_09285 EC: 2.4.1.7
UniProt
Find proteins for A0A3S9HEG3 (Jeotgalibaca ciconiae) Explore A0A3S9HEG3  Go to UniProtKB:  A0A3S9HEG3

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
TRS	C [auth B]	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C4 H12 N O3 LENZDBCJOHFCAS-UHFFFAOYSA-O

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.05 Å
• R-Value Free: 0.254 
• R-Value Work: 0.196 
• Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 51.639	α = 90
b = 90.828	β = 92.832
c = 96.17	γ = 90

Software Package:

Software Name	Purpose
XDS	data scaling
Aimless	data scaling
PHASER	phasing
REFMAC	refinement

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-01-18 
Deposition Author(s): Ubiparip, Z., Capra, N., Rozeboom, H.J., Desmet, T., Thunnissen, A.M.W.H.

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Funding Organization	Location	Grant Number
European Commission	European Union	761030

Revision History  

• Version 1.0: 2023-01-18
  Type: Initial release
  
• Version 1.1: 2024-01-31
  Changes: Data collection, Refinement description