7QQI

Sucrose phosphorylase from Faecalibaculum rodentium

• PDB DOI: https://doi.org/10.2210/pdb7QQI/pdb

• Classification: TRANSFERASE
• Organism(s): Faecalibaculum rodentium
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2022-01-08 Released: 2023-01-18 
• Deposition Author(s): Ubiparip, Z., Capra, N., Rozeboom, H.J., Desmet, T., Thunnissen, A.M.W.H.
• Funding Organization(s): European Commission

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.36 Å
• R-Value Free: 0.185 
• R-Value Work: 0.149 

Literature

Sucrose phosphorylase from Faecalibaculum rodentium

Ubiparip, Z., Capra, N., Rozeboom, H.J., Thunnissen, A.M.W.H., Desmet, T.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 57.02 kDa 
• Atom Count: 4,408 
• Modelled Residue Count: 481 
• Deposited Residue Count: 491 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Aamy domain-containing protein	A	491	Faecalibaculum rodentium	Mutation(s): 0  Gene Names: AALO17_25870
UniProt
Find proteins for A0A140DYJ4 (Faecalibaculum rodentium) Explore A0A140DYJ4  Go to UniProtKB:  A0A140DYJ4

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
TRS	B [auth A]	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C4 H12 N O3 LENZDBCJOHFCAS-UHFFFAOYSA-O

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.36 Å
• R-Value Free: 0.185 
• R-Value Work: 0.149 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 44.798	α = 90
b = 94.409	β = 90
c = 104.772	γ = 90

Software Package:

Software Name	Purpose
XDS	data scaling
Aimless	data scaling
PHASER	phasing
REFMAC	refinement

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-01-18 
Deposition Author(s): Ubiparip, Z., Capra, N., Rozeboom, H.J., Desmet, T., Thunnissen, A.M.W.H.

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Funding Organization	Location	Grant Number
European Commission	European Union	761030

Revision History  

• Version 1.0: 2023-01-18
  Type: Initial release
  
• Version 1.1: 2024-01-31
  Changes: Data collection, Refinement description