7QFY | pdb_00007qfy

Fusarium oxysporum M36 protease without the propeptide

• PDB DOI: https://doi.org/10.2210/pdb7QFY/pdb

• Classification: RECOMBINATION
• Organism(s): Fusarium oxysporum
• Expression System: Komagataella pastoris
• Mutation(s): No 


• Deposited: 2021-12-07 Released: 2022-12-21 
• Deposition Author(s): Wilkens, C., Qiu, J., Meyer, A.S., Morth, J.P.
• Funding Organization(s): Chinese Scholarship Council, Technical University of Denmark (DTU)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.62 Å
• R-Value Free: 
  0.173 (Depositor), 0.170 (DCC) 
• R-Value Work: 
  0.148 (Depositor), 0.150 (DCC) 
• R-Value Observed: 
  0.149 (Depositor) 

Starting Model: experimental

Literature

Fusarium oxysporum M36 protease without the propeptide

Wilkens, C., Qiu, J., Meyer, A.S., Morth, J.P.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 42.54 kDa 
• Atom Count: 3,337 
• Modeled Residue Count: 388 
• Deposited Residue Count: 388 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Extracellular metalloproteinase	A	388	Fusarium oxysporum	Mutation(s): 0  Gene Names: krtC EC: 3.4.24
UniProt
Find proteins for M1UZ70 (Fusarium oxysporum) Explore M1UZ70  Go to UniProtKB:  M1UZ70
Glycosylation
Glycosylation Sites: 1

Oligosaccharides

Help

Entity ID: 2
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	B	2		N-Glycosylation
Glycosylation Resources
GlyTouCan:  G42666HT GlyCosmos:  G42666HT GlyGen:  G42666HT

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ZN (Subject of Investigation/LOI)	C [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N
CA (Subject of Investigation/LOI)	D [auth A], E [auth A]	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.62 Å
• R-Value Free:  0.173 (Depositor), 0.170 (DCC) 
• R-Value Work:  0.148 (Depositor), 0.150 (DCC) 
• R-Value Observed: 0.149 (Depositor) 

Space Group: P 4₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 57.371	α = 90
b = 57.371	β = 90
c = 105.895	γ = 90

Software Package:

Software Name	Purpose
MxCuBE	data collection
autoPROC	data processing
Coot	model building
PHENIX	refinement
PHASER	phasing
Aimless	data scaling
XDS	data reduction

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2022-12-21 
Deposition Author(s): Wilkens, C., Qiu, J., Meyer, A.S., Morth, J.P.

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Funding Organization	Location	Grant Number
Chinese Scholarship Council	China	201806910049
Technical University of Denmark (DTU)	Denmark	--

Revision History  

• Version 1.0: 2022-12-21
  Type: Initial release
  
• Version 1.1: 2024-01-31
  Changes: Data collection, Refinement description
• Version 1.2: 2024-10-09
  Changes: Structure summary