7Q52

Crystal structure of S/T protein kinase PknG from Mycobacterium tuberculosis in complex with inhibitor L2W


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.268 
  • R-Value Work: 0.215 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Co-solvent sites based discovery of a Mycobacterium tuberculosis Protein Kinase G inhibitor

Burastero, O.Defelipe, L.A.Gola, G.Tateosian, N.L.Lopez, E.D.Martinena, C.B.Arcon, J.P.Dodes Traian, M.Wetzler, D.E.Bento, I.Barril, X.Ramirez, J.A.Marti, M.A.Garcia-Alai, M.M.Turjanski, A.G.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Serine/threonine-protein kinase PknGA [auth AAA]333Mycobacterium tuberculosis H37RvMutation(s): 0 
Gene Names: pknGRv0410cMTCY22G10.06c
EC: 2.7.11.1
UniProt
Find proteins for P9WI73 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
Explore P9WI73 
Go to UniProtKB:  P9WI73
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP9WI73
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
8ZC (Subject of Investigation/LOI)
Query on 8ZC

Download Ideal Coordinates CCD File 
C [auth AAA]2-azanyl-3-(4-fluorophenyl)carbonyl-indolizine-1-carboxamide
C16 H12 F N3 O2
 Ligand Interaction
FE
Query on FE

Download Ideal Coordinates CCD File 
B [auth AAA]FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
 Ligand Interaction
NA
Query on NA

Download Ideal Coordinates CCD File 
D [auth AAA],
E [auth AAA]
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.268 
  • R-Value Work: 0.215 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 77.327α = 90
b = 37.016β = 105.5
c = 106.781γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
MOLREPphasing

Structure Validation

View Full Validation Report




Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Agencia Nacional de Promocion Cientifica y Tecnologica (FONCYT)European UnionPICT2015-2276
H2020 Marie Curie Actions of the European CommissionEuropean Union664726

Revision History  (Full details and data files)

  • Version 1.0: 2022-06-22
    Type: Initial release