7Q1G

Crystal structure and metal binding properties of the periplasmic iron component EfeM from Pseudomonas syringae EfeUOB/M iron-transport system


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.60 Å
  • R-Value Free: 0.210 
  • R-Value Work: 0.185 
  • R-Value Observed: 0.186 

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This is version 1.2 of the entry. See complete history


Literature

Crystal structure and metal binding properties of the periplasmic iron component EfeM from Pseudomonas syringae EfeUOB/M iron-transport system.

Rajasekaran, M.B.Hussain, R.Siligardi, G.Andrews, S.C.Watson, K.A.

(2022) Biometals 35: 573-589

  • DOI: https://doi.org/10.1007/s10534-022-00389-2
  • Primary Citation of Related Structures:  
    7Q1G

  • PubMed Abstract: 

    EfeUOB/M has been characterised in Pseudomonas syringae pathovar. syringae as a novel type of ferrous-iron transporter, consisting of an inner-membrane protein (EfeU Psy ) and three periplasmic proteins (EfeO Psy , EfeM Psy and EfeB Psy ). The role of an iron permease and peroxidase function has been identified for the EfeU and EfeB proteins, respectively, but the role of EfeO/M remains unclear. EfeM Psy is an 'M75-only' EfeO-like protein with a C-terminal peptidase-M75 domain (EfeO II /EfeM family). Herein, we report the 1.6 Å resolution crystal structure of EfeM Psy , the first structural report for an EfeM component of P. syringae pv. syringae. The structure possesses the bi-lobate architecture found in other bacterial periplasmic substrate/solute binding proteins. Metal binding studies, using SRCD and ICP-OES, reveal a preference of EfeM Psy for copper, iron and zinc. This work provides detailed knowledge of the structural scaffold, the metal site geometry, and the divalent metal binding potential of EfeM. This work provides crucial underpinning for a more detailed understanding of the role of EfeM/EfeO proteins and the peptidase-M75 domains in EfeUOB/M iron uptake systems in bacteria.


  • Organizational Affiliation

    School of Biological Sciences, Health and Life Sciences Building, University of Reading, Whiteknights Campus, Reading, RG6 6EX, UK.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Peptidase_M75 domain-containing protein
A, B
285Pseudomonas syringae pv. syringae B728aMutation(s): 0 
Gene Names: Psyr_3370
UniProt
Find proteins for Q4ZR20 (Pseudomonas syringae pv. syringae (strain B728a))
Explore Q4ZR20 
Go to UniProtKB:  Q4ZR20
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ4ZR20
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.60 Å
  • R-Value Free: 0.210 
  • R-Value Work: 0.185 
  • R-Value Observed: 0.186 
  • Space Group: P 2 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 46.8α = 90
b = 95.23β = 90
c = 152.75γ = 90
Software Package:
Software NamePurpose
SCALAdata scaling
PHENIXrefinement
PDB_EXTRACTdata extraction
xia2data reduction
PHENIXphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Other government--

Revision History  (Full details and data files)

  • Version 1.0: 2022-04-27
    Type: Initial release
  • Version 1.1: 2022-06-15
    Changes: Database references
  • Version 1.2: 2024-01-31
    Changes: Data collection, Refinement description