7PO7

Phosphoglycolate phosphatase from Mus musculus

PDB DOI: https://doi.org/10.2210/pdb7PO7/pdb

Classification: HYDROLASE
Organism(s): Mus musculus
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2021-09-08 Released: 2022-12-21
Deposition Author(s): Schloetzer, J., Schindelin, H., Fratz, S.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.31 Å
R-Value Free: 0.230
R-Value Work: 0.208
R-Value Observed: 0.208

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Discovery of a small-molecule inhibitor of the metabolic damage control enzyme phosphoglycolate phosphatase

Schloetzer, J., Jeanclos, E., Schindelin, H., Gohla, A., Fratz, S.

To be published.

Macromolecule Content

Total Structure Weight: 279.15 kDa
Atom Count: 18,516
Modelled Residue Count: 2,371
Deposited Residue Count: 2,568
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glycerol-3-phosphate phosphatase	A, B, C, D, E A, B, C, D, E, F, G, H	321	Mus musculus	Mutation(s): 2 Gene Names: Pgp EC: 3.1.3.21 (PDB Primary Data), 3.1.3.48 (PDB Primary Data)
UniProt
Find proteins for Q8CHP8 (Mus musculus) Explore Q8CHP8 Go to UniProtKB: Q8CHP8
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q8CHP8
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SO4 Query on SO4 Download Ideal Coordinates CCD File SDF format, chain DA [auth F] SDF format, chain EA [auth F] SDF format, chain J [auth A] SDF format, chain N [auth B] SDF format, chain NA [auth H] SDF format, chain S [auth C] SDF format, chain W [auth D] SDF format, chain Z [auth E] MOL2 format, chain DA [auth F] MOL2 format, chain EA [auth F] MOL2 format, chain J [auth A] MOL2 format, chain N [auth B] MOL2 format, chain NA [auth H] MOL2 format, chain S [auth C] MOL2 format, chain W [auth D] MOL2 format, chain Z [auth E]	DA [auth F] EA [auth F] J [auth A] N [auth B] NA [auth H] DA [auth F], EA [auth F], J [auth A], N [auth B], NA [auth H], S [auth C], W [auth D], Z [auth E]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain DA [auth F] Focus chain EA [auth F] Focus chain J [auth A] Focus chain N [auth B] Focus chain NA [auth H] Focus chain S [auth C] Focus chain W [auth D] Focus chain Z [auth E] Interactions & Density Focus chain DA [auth F] Focus chain EA [auth F] Focus chain J [auth A] Focus chain N [auth B] Focus chain NA [auth H] Focus chain S [auth C] Focus chain W [auth D] Focus chain Z [auth E]
GOL Query on GOL Download Ideal Coordinates CCD File SDF format, chain AA [auth F] SDF format, chain CA [auth F] SDF format, chain GA [auth G] SDF format, chain IA [auth H] SDF format, chain JA [auth H] SDF format, chain K [auth B] SDF format, chain KA [auth H] SDF format, chain LA [auth H] SDF format, chain M [auth B] SDF format, chain O [auth C] SDF format, chain Q [auth C] SDF format, chain R [auth C] SDF format, chain T [auth D] SDF format, chain V [auth D] SDF format, chain Y [auth E] MOL2 format, chain AA [auth F] MOL2 format, chain CA [auth F] MOL2 format, chain GA [auth G] MOL2 format, chain IA [auth H] MOL2 format, chain JA [auth H] MOL2 format, chain K [auth B] MOL2 format, chain KA [auth H] MOL2 format, chain LA [auth H] MOL2 format, chain M [auth B] MOL2 format, chain O [auth C] MOL2 format, chain Q [auth C] MOL2 format, chain R [auth C] MOL2 format, chain T [auth D] MOL2 format, chain V [auth D] MOL2 format, chain Y [auth E]	AA [auth F] CA [auth F] GA [auth G] IA [auth H] JA [auth H] AA [auth F], CA [auth F], GA [auth G], IA [auth H], JA [auth H], K [auth B], KA [auth H], LA [auth H], M [auth B], O [auth C], Q [auth C], R [auth C], T [auth D], V [auth D], Y [auth E]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain AA [auth F] Focus chain CA [auth F] Focus chain GA [auth G] Focus chain IA [auth H] Focus chain JA [auth H] Focus chain K [auth B] Focus chain KA [auth H] Focus chain LA [auth H] Focus chain M [auth B] Focus chain O [auth C] Focus chain Q [auth C] Focus chain R [auth C] Focus chain T [auth D] Focus chain V [auth D] Focus chain Y [auth E] Interactions & Density Focus chain AA [auth F] Focus chain CA [auth F] Focus chain GA [auth G] Focus chain IA [auth H] Focus chain JA [auth H] Focus chain K [auth B] Focus chain KA [auth H] Focus chain LA [auth H] Focus chain M [auth B] Focus chain O [auth C] Focus chain Q [auth C] Focus chain R [auth C] Focus chain T [auth D] Focus chain V [auth D] Focus chain Y [auth E]
ACT Query on ACT Download Ideal Coordinates CCD File SDF format, chain BA [auth F] SDF format, chain FA [auth G] SDF format, chain HA [auth H] SDF format, chain I [auth A] SDF format, chain L [auth B] SDF format, chain P [auth C] SDF format, chain U [auth D] SDF format, chain X [auth E] MOL2 format, chain BA [auth F] MOL2 format, chain FA [auth G] MOL2 format, chain HA [auth H] MOL2 format, chain I [auth A] MOL2 format, chain L [auth B] MOL2 format, chain P [auth C] MOL2 format, chain U [auth D] MOL2 format, chain X [auth E]	BA [auth F] FA [auth G] HA [auth H] I [auth A] L [auth B] BA [auth F], FA [auth G], HA [auth H], I [auth A], L [auth B], P [auth C], U [auth D], X [auth E]	ACETATE ION C₂ H₃ O₂ QTBSBXVTEAMEQO-UHFFFAOYSA-M		Interactions Focus chain BA [auth F] Focus chain FA [auth G] Focus chain HA [auth H] Focus chain I [auth A] Focus chain L [auth B] Focus chain P [auth C] Focus chain U [auth D] Focus chain X [auth E] Interactions & Density Focus chain BA [auth F] Focus chain FA [auth G] Focus chain HA [auth H] Focus chain I [auth A] Focus chain L [auth B] Focus chain P [auth C] Focus chain U [auth D] Focus chain X [auth E]
CA Query on CA Download Ideal Coordinates CCD File SDF format, chain MA [auth H] MOL2 format, chain MA [auth H]	MA [auth H]	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N		Interactions Focus chain MA [auth H] Interactions & Density Focus chain MA [auth H]