7PI1 | pdb_00007pi1

Bacillus subtilis PabB

PDB DOI: https://doi.org/10.2210/pdb7PI1/pdb

Classification: TRANSFERASE
Organism(s): Bacillus subtilis subsp. subtilis str. 168
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2021-08-19 Released: 2022-09-07
Deposition Author(s): Rooms, L.D., Race, P.R.
Funding Organization(s): Other government

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.73 Å
R-Value Free:
0.236 (Depositor), 0.240 (DCC)
R-Value Work:
0.199 (Depositor), 0.210 (DCC)

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of Bacillus subtilis PabB, component 1.

Rooms, L.D., Race, P.R., Devine, A., Willis, C.L., Back, C.R., Burton, N., Sudol, A.

To be published.

Macromolecule Content

Total Structure Weight: 222.77 kDa
Atom Count: 15,868
Modeled Residue Count: 1,829
Deposited Residue Count: 1,956
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Aminodeoxychorismate synthase component 1	A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD]	489	Bacillus subtilis subsp. subtilis str. 168	Mutation(s): 0 Gene Names: pabB, pab, BSU00740 EC: 2.6.1.85
UniProt
Find proteins for P28820 (Bacillus subtilis (strain 168)) Explore P28820 Go to UniProtKB: P28820
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P28820
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
TRP (Subject of Investigation/LOI) Query on TRP Download Ideal Coordinates CCD File SDF format, chain K [auth DDD] SDF format, chain I [auth CCC] SDF format, chain G [auth BBB] SDF format, chain F [auth AAA] MOL2 format, chain K [auth DDD] MOL2 format, chain I [auth CCC] MOL2 format, chain G [auth BBB] MOL2 format, chain F [auth AAA] mmCIF format, chain K [auth DDD] mmCIF format, chain I [auth CCC] mmCIF format, chain G [auth BBB] mmCIF format, chain F [auth AAA]	F [auth AAA], G [auth BBB], I [auth CCC], K [auth DDD]	TRYPTOPHAN C₁₁ H₁₂ N₂ O₂ QIVBCDIJIAJPQS-VIFPVBQESA-N		Interactions Focus chain F [auth AAA] Focus chain G [auth BBB] Focus chain I [auth CCC] Focus chain K [auth DDD] Interactions & Density Focus chain F [auth AAA] Focus chain G [auth BBB] Focus chain I [auth CCC] Focus chain K [auth DDD]
MG (Subject of Investigation/LOI) Query on MG Download Ideal Coordinates CCD File SDF format, chain L [auth DDD] SDF format, chain J [auth CCC] SDF format, chain H [auth BBB] SDF format, chain E [auth AAA] MOL2 format, chain L [auth DDD] MOL2 format, chain J [auth CCC] MOL2 format, chain H [auth BBB] MOL2 format, chain E [auth AAA] mmCIF format, chain L [auth DDD] mmCIF format, chain J [auth CCC] mmCIF format, chain H [auth BBB] mmCIF format, chain E [auth AAA]	E [auth AAA], H [auth BBB], J [auth CCC], L [auth DDD]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain E [auth AAA] Focus chain H [auth BBB] Focus chain J [auth CCC] Focus chain L [auth DDD] Interactions & Density Focus chain E [auth AAA] Focus chain H [auth BBB] Focus chain J [auth CCC] Focus chain L [auth DDD]