Structural characterization of human neutralizing antibodies against JC and BK polyomavirus
Harprecht, C., Stroeh, L.J., Senn, L., O'Hara, B.A., Nagel, F., Freytag, J., Stiehrof, Y.D., Atwood, W.J., Combaluzier, B., Stehle, T.To be published.
Experimental Data Snapshot
Starting Models: experimental
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wwPDB Validation 3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Major capsid protein VP1 | A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD], E [auth EEE] | 272 | JC polyomavirus | Mutation(s): 0 | ![]() |
UniProt | |||||
Find proteins for P03089 (JC polyomavirus) Explore P03089 Go to UniProtKB: P03089 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P03089 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Fab 27C2 light chain | F [auth FFF], G [auth GGG], I [auth III], K [auth KKK], M [auth MMM] | 212 | Homo sapiens | Mutation(s): 0 | ![]() |
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Fab 27C2 heavy chain | H [auth HHH], J [auth JJJ], L [auth LLL], N [auth NNN], O [auth YYY] | 398 | Homo sapiens | Mutation(s): 0 | ![]() |
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 137.07 | α = 90 |
b = 110.44 | β = 93.115 |
c = 158.21 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
XDS | data reduction |
XDS | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
---|---|---|
German Research Foundation (DFG) | Germany | FOR2327 |