7P22 | pdb_00007p22

Thaumatin-like protein of Amycolatopsis rifamycinica

• PDB DOI: https://doi.org/10.2210/pdb7P22/pdb

• Classification: UNKNOWN FUNCTION
• Organism(s): Amycolatopsis rifamycinica
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2021-07-03 Released: 2022-07-13 
• Deposition Author(s): Eder, M., Hofer, G., Odabas, M., Keller, W.
• Funding Organization(s): Austrian Science Fund

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.87 Å
• R-Value Free: 
  0.206 (Depositor), 0.210 (DCC) 
• R-Value Work: 
  0.181 (Depositor), 0.180 (DCC) 
• R-Value Observed: 
  0.183 (Depositor) 

Starting Model: experimental

Literature

The structure of Thaumatin-like proteins of a bacterial, a fungal and an animal origin

Eder, M., Keller, W., Hofer, G., Odabas, M.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 52.13 kDa 
• Atom Count: 3,648 
• Modeled Residue Count: 441 
• Deposited Residue Count: 488 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Thaumatin pathogenesis-like protein	A, B	244	Amycolatopsis rifamycinica	Mutation(s): 0  Gene Names: DV20_29330
UniProt
Find proteins for A0A066TYR3 (Amycolatopsis rifamycinica) Explore A0A066TYR3  Go to UniProtKB:  A0A066TYR3

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.87 Å
• R-Value Free:  0.206 (Depositor), 0.210 (DCC) 
• R-Value Work:  0.181 (Depositor), 0.180 (DCC) 
• R-Value Observed: 0.183 (Depositor) 

Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 80.341	α = 90
b = 80.341	β = 90
c = 169.889	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XSCALE	data scaling
PDB_EXTRACT	data extraction
XDS	data reduction
PHENIX	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2022-07-13 
Deposition Author(s): Eder, M., Hofer, G., Odabas, M., Keller, W.

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Funding Organization	Location	Grant Number
Austrian Science Fund	Austria	F 4604-B19

Revision History  

• Version 1.0: 2022-07-13
  Type: Initial release
  
• Version 1.1: 2024-01-31
  Changes: Data collection, Refinement description
• Version 1.2: 2024-11-06
  Changes: Structure summary