7P22

Thaumatin-like protein of Amycolatopsis rifamycinica

PDB DOI: https://doi.org/10.2210/pdb7P22/pdb

Classification: UNKNOWN FUNCTION
Organism(s): Amycolatopsis rifamycinica
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2021-07-03 Released: 2022-07-13
Deposition Author(s): Eder, M., Hofer, G., Odabas, M., Keller, W.
Funding Organization(s): Austrian Science Fund

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.87 Å
R-Value Free: 0.206
R-Value Work: 0.181
R-Value Observed: 0.183

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

The structure of Thaumatin-like proteins of a bacterial, a fungal and an animal origin

Eder, M., Keller, W., Hofer, G., Odabas, M.

To be published.

Macromolecule Content

Total Structure Weight: 52.13 kDa
Atom Count: 3,648
Modelled Residue Count: 441
Deposited Residue Count: 488
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Thaumatin pathogenesis-like protein	A, B	244	Amycolatopsis rifamycinica	Mutation(s): 0 Gene Names: DV20_29330
UniProt
Find proteins for A0A066TYR3 (Amycolatopsis rifamycinica) Explore A0A066TYR3 Go to UniProtKB: A0A066TYR3
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A066TYR3
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.87 Å
R-Value Free: 0.206
R-Value Work: 0.181
R-Value Observed: 0.183
Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 80.341	α = 90
b = 80.341	β = 90
c = 169.889	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XSCALE	data scaling
PDB_EXTRACT	data extraction
XDS	data reduction
PHENIX	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2022-07-13

Deposition Author(s):

Funding Organization	Location	Grant Number
Austrian Science Fund	Austria	F 4604-B19

Revision History (Full details and data files)

Version 1.0: 2022-07-13
Type: Initial release
Version 1.1: 2024-01-31
Changes: Data collection, Refinement description

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.