Download MendeleyCrystal structure of IpgC in complex with a follow-up compound based on J20
Gardonyi, M., Heine, A., Klebe, G.To be published.
7OWV
Crystal structure of IpgC in complex with a follow-up compound based on J20
- PDB DOI: https://doi.org/10.2210/pdb7OWV/pdb
- Classification: CHAPERONE
- Organism(s): Shigella flexneri
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2021-06-19 Released: 2022-07-13
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.59 Å
- R-Value Free: 0.220
- R-Value Work: 0.188
- R-Value Observed: 0.190
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Chaperone protein IpgC | 143 | Shigella flexneri | Mutation(s): 0 Gene Names: ipgC, ippI, CP0129 |  | |
UniProt | |||||
Find proteins for P0A2U4 (Shigella flexneri) Explore P0A2U4 Go to UniProtKB: P0A2U4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P0A2U4 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 2IY Query on 2IY | E [auth B] | 3-(4-chlorophenyl)-5-methylsulfanyl-1~{H}-pyrazole-4-carbonitrile C11 H8 Cl N3 S KRQSUBRVYHNKPM-UHFFFAOYSA-N |  | ||
| PGE Query on PGE | G [auth B] | TRIETHYLENE GLYCOL C6 H14 O4 ZIBGPFATKBEMQZ-UHFFFAOYSA-N |  | ||
| DMS Query on DMS | C [auth A] | DIMETHYL SULFOXIDE C2 H6 O S IAZDPXIOMUYVGZ-UHFFFAOYSA-N |  | ||
| CL Query on CL | D [auth A], F [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.59 Å
- R-Value Free: 0.220
- R-Value Work: 0.188
- R-Value Observed: 0.190
- Space Group: P 32 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 57.788 | α = 90 |
| b = 57.788 | β = 90 |
| c = 160.301 | γ = 120 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| XDS | data scaling |
| PHASER | phasing |
| Coot | model building |
Entry History
Deposition Data
- Released Date: 2022-07-13 Deposition Author(s): Gardonyi, M., Heine, A., Klebe, G.
Revision History (Full details and data files)
- Version 1.0: 2022-07-13
Type: Initial release - Version 1.1: 2024-01-31
Changes: Data collection, Refinement description
