7OW2

E3 RING ligase binding domain with peptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.17 Å
  • R-Value Free: 0.247 
  • R-Value Work: 0.208 
  • R-Value Observed: 0.209 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

E3 ligase targeting domain

James, L.C.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
E3 ubiquitin-protein ligase TRIM7
A, B, C, D
171Homo sapiensMutation(s): 0 
Gene Names: TRIM7GNIPRNF90
EC: 2.3.2.27
UniProt & NIH Common Fund Data Resources
Find proteins for Q9C029 (Homo sapiens)
Explore Q9C029 
Go to UniProtKB:  Q9C029
PHAROS:  Q9C029
GTEx:  ENSG00000146054 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9C029
Sequence Annotations
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  • Reference Sequence

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
E3 ubiquitin-protein ligase RNF187 peptide
E, F, G, H
7Homo sapiensMutation(s): 0 
Gene Names: RNF187
EC: 2.3.2.27
UniProt & NIH Common Fund Data Resources
Find proteins for Q5TA31 (Homo sapiens)
Explore Q5TA31 
Go to UniProtKB:  Q5TA31
PHAROS:  Q5TA31
GTEx:  ENSG00000168159 
Entity Groups  
UniProt GroupQ5TA31
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.17 Å
  • R-Value Free: 0.247 
  • R-Value Work: 0.208 
  • R-Value Observed: 0.209 
  • Space Group: P 61
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 108.119α = 90
b = 108.119β = 90
c = 137.142γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
ADDREFdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

  • Released Date: 2022-07-13 
  • Deposition Author(s): James, L.C.

Revision History  (Full details and data files)

  • Version 1.0: 2022-07-13
    Type: Initial release
  • Version 1.1: 2024-01-31
    Changes: Data collection, Refinement description