7OVZ | pdb_00007ovz

SOLUTION NMR STRUCTURE OF MAXIMIN 1 IN 50% TRIFLUOROETHANOL


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: target function 

wwPDB Validation 3D Report Full Report

Validation slider image for 7OVZ

This is version 1.4 of the entry. See complete history

Literature

Biophysical study of the structure and dynamics of the antimicrobial peptide maximin 1.

Timmons, P.B.Hewage, C.M.

(2022) J Pept Sci 28: e3370-e3370

  • DOI: https://doi.org/10.1002/psc.3370
  • Primary Citation Related Structures: 
    7OVZ

  • PubMed Abstract: 

    Maximin 1 is a cationic, amphipathic antimicrobial peptide found in the skin secretions and brains of the Chinese red belly toad Bombina maxima. The 27 amino acid residue-long peptide is biologically interesting as it possesses a variety of biological activities, including antibacterial, antifungal, antiviral, antitumour and spermicidal activities. Its three-dimensional structural model was obtained in a 50/50% water/2,2,2-trifluoroethanol-d 3 mixture using two-dimensional NMR spectroscopy. Maximin 1 was found to adopt an α-helical structure from residue Ile 2 to Ala 26 . The peptide is amphipathic, showing a clear separation between polar and non-polar residues. The interactions with sodium dodecyl sulfate micelles, a widely-used bacterial membrane-mimicking environment, were modelled using molecular dynamics simulations. The peptide maintains an α-helical conformation, occasionally displaying a flexibility around the Gly 9 and Gly 16 residues, which is likely responsible for the peptide's low haemolytic activity. It is found to preferentially adopt a position parallel to the micellar surface, establishing a number of hydrophobic and electrostatic interactions with the micelle.


  • Organizational Affiliation
    • UCD School of Biomolecular and Biomedical Science,UCD Centre for Synthesis and Chemical Biology, UCD Conway Institute, University College Dublin, Dublin 4, Ireland.

Macromolecule Content 

  • Total Structure Weight: 2.68 kDa 
  • Atom Count: 187 
  • Modeled Residue Count: 27 
  • Deposited Residue Count: 27 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Maximin-1A [auth M]27Bombina maximaMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for P83080 (Bombina maxima)
Explore P83080 
Go to UniProtKB:  P83080
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP83080
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: target function 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2021-10-13
    Type: Initial release
  • Version 1.1: 2022-01-19
    Changes: Database references
  • Version 1.2: 2022-02-02
    Changes: Database references
  • Version 1.3: 2023-06-14
    Changes: Other
  • Version 1.4: 2024-06-19
    Changes: Data collection, Database references