7OVX

E3 RING ligase binding domain

• PDB DOI: https://doi.org/10.2210/pdb7OVX/pdb

• Classification: UNKNOWN FUNCTION
• Organism(s): Homo sapiens
• Expression System: Escherichia phage EcSzw-2
• Mutation(s): No 


• Deposited: 2021-06-15 Released: 2022-06-22 
• Deposition Author(s): James, L.C.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.70 Å
• R-Value Free: 0.226 
• R-Value Work: 0.183 
• R-Value Observed: 0.185 

Literature

E3 ligase targeting domain

James, L.C.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 21.46 kDa 
• Atom Count: 1,655 
• Modelled Residue Count: 186 
• Deposited Residue Count: 186 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
E3 ubiquitin-protein ligase TRIM7	A	174	Homo sapiens	Mutation(s): 0  Gene Names: TRIM7, GNIP, RNF90 EC: 2.3.2.27
UniProt & NIH Common Fund Data Resources
Find proteins for Q9C029 (Homo sapiens) Explore Q9C029  Go to UniProtKB:  Q9C029
PHAROS:  Q9C029 GTEx:  ENSG00000146054

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Peptide G	B [auth Q]	12	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P46976 (Homo sapiens) Explore P46976  Go to UniProtKB:  P46976
PHAROS:  P46976 GTEx:  ENSG00000163754

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.70 Å
• R-Value Free: 0.226 
• R-Value Work: 0.183 
• R-Value Observed: 0.185 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 37.63	α = 90
b = 54.23	β = 90
c = 81.4	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
iMOSFLM	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2022-06-22 
Deposition Author(s): James, L.C.

Revision History  

• Version 1.0: 2022-06-22
  Type: Initial release
  
• Version 1.1: 2024-01-31
  Changes: Data collection, Refinement description