7OUV | pdb_00007ouv

Crystal structure of human filamin C domains 14-15 cardiovascular disease causing mutation S1624L

PDB DOI: https://doi.org/10.2210/pdb7OUV/pdb

Classification: STRUCTURAL PROTEIN
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2021-06-13 Released: 2022-06-22
Deposition Author(s): Mlynek, G., Djinovic-Carugo, K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free:
0.240 (Depositor), 0.240 (DCC)
R-Value Work:
0.213 (Depositor), 0.210 (DCC)
R-Value Observed:
0.214 (Depositor)

Starting Model: other
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wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Analysis and prediction of pathogenic missense variants in human filamin C

Mlynek, G., Djinovic-Carugo, K.

To be published.

Macromolecule Content

Total Structure Weight: 43.01 kDa
Atom Count: 3,376
Modeled Residue Count: 406
Deposited Residue Count: 410
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Isoform 2 of Filamin-C	A, B	205	Homo sapiens	Mutation(s): 1 Gene Names: FLNC, ABPL, FLN2
UniProt & NIH Common Fund Data Resources
Find proteins for Q14315 (Homo sapiens) Explore Q14315 Go to UniProtKB: Q14315
PHAROS: Q14315 GTEx: ENSG00000128591
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q14315
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free: 0.240 (Depositor), 0.240 (DCC)
R-Value Work: 0.213 (Depositor), 0.210 (DCC)
R-Value Observed: 0.214 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 39.133	α = 90
b = 70.498	β = 90
c = 156.937	γ = 90

Software Package:

Software Name	Purpose
XDS	data scaling
PHENIX	refinement
XDS	data reduction
GDA	data collection
PHASER	phasing
Coot	model building
PDB-REDO	refinement

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2022-06-22

Deposition Author(s):

Djinovic-Carugo, K.

Revision History (Full details and data files)

Version 1.0: 2022-06-22
Type: Initial release
Version 1.1: 2024-05-01
Changes: Data collection, Refinement description
Version 1.2: 2024-11-06
Changes: Structure summary

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.