7ONJ

Mechanosensitive channel MscS solubilized with LMNG in open conformation


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Mechanosensitive channel gating by delipidation.

Flegler, V.J.Rasmussen, A.Borbil, K.Boten, L.Chen, H.A.Deinlein, H.Halang, J.Hellmanzik, K.Loffler, J.Schmidt, V.Makbul, C.Kraft, C.Hedrich, R.Rasmussen, T.Bottcher, B.

(2021) Proc Natl Acad Sci U S A 118

  • DOI: https://doi.org/10.1073/pnas.2107095118
  • Primary Citation of Related Structures:  
    7ONJ, 7ONL, 7OO0, 7OO6, 7OO8, 7OOA

  • PubMed Abstract: 

    The mechanosensitive channel of small conductance (MscS) protects bacteria against hypoosmotic shock. It can sense the tension in the surrounding membrane and releases solutes if the pressure in the cell is getting too high. The membrane contacts MscS at sensor paddles, but lipids also leave the membrane and move along grooves between the paddles to reside as far as 15 Å away from the membrane in hydrophobic pockets. One sensing model suggests that a higher tension pulls lipids from the grooves back to the membrane, which triggers gating. However, it is still unclear to what degree this model accounts for sensing and what contribution the direct interaction of the membrane with the channel has. Here, we show that MscS opens when it is sufficiently delipidated by incubation with the detergent dodecyl-β-maltoside or the branched detergent lauryl maltose neopentyl glycol. After addition of detergent-solubilized lipids, it closes again. These results support the model that lipid extrusion causes gating: Lipids are slowly removed from the grooves and pockets by the incubation with detergent, which triggers opening. Addition of lipids in micelles allows lipids to migrate back into the pockets, which closes the channel even in the absence of a membrane. Based on the distribution of the aliphatic chains in the open and closed conformation, we propose that during gating, lipids leave the complex on the cytosolic leaflet at the height of highest lateral tension, while on the periplasmic side, lipids flow into gaps, which open between transmembrane helices.


  • Organizational Affiliation

    Biocenter and Rudolf-Virchow-Zentrum, Universität Würzburg, 97080 Würzburg, Germany.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Mechanosensitive channel of small conductance (MscS)294Escherichia coliMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
AV0
Query on AV0

Download Ideal Coordinates CCD File 
AA [auth B]
BB [auth E]
DA [auth B]
EA [auth B]
EB [auth E]
AA [auth B],
BB [auth E],
DA [auth B],
EA [auth B],
EB [auth E],
FA [auth B],
FB [auth E],
GB [auth E],
HA [auth B],
IB [auth E],
J [auth A],
JA [auth C],
K [auth A],
KB [auth F],
L [auth A],
MA [auth C],
MB [auth F],
N [auth A],
NA [auth C],
OA [auth C],
P [auth A],
PB [auth F],
QA [auth C],
QB [auth F],
R [auth G],
RB [auth F],
SA [auth D],
U [auth G],
V [auth G],
VA [auth D],
W [auth G],
WA [auth D],
XA [auth D],
Y [auth G],
ZA [auth D]
Lauryl Maltose Neopentyl Glycol
C47 H88 O22
MADJBYLAYPCCOO-VWHTXWAPSA-N
PEE
Query on PEE

Download Ideal Coordinates CCD File 
BA [auth B]
CB [auth E]
H [auth A]
KA [auth C]
NB [auth F]
BA [auth B],
CB [auth E],
H [auth A],
KA [auth C],
NB [auth F],
S [auth G],
TA [auth D]
1,2-dioleoyl-sn-glycero-3-phosphoethanolamine
C41 H78 N O8 P
MWRBNPKJOOWZPW-NYVOMTAGSA-N
LMT
Query on LMT

Download Ideal Coordinates CCD File 
AB [auth E]
CA [auth B]
DB [auth E]
GA [auth B]
HB [auth E]
AB [auth E],
CA [auth B],
DB [auth E],
GA [auth B],
HB [auth E],
I [auth A],
IA [auth C],
JB [auth F],
LA [auth C],
LB [auth F],
M [auth A],
O [auth A],
OB [auth F],
PA [auth C],
Q [auth G],
RA [auth D],
T [auth G],
UA [auth D],
X [auth G],
YA [auth D],
Z [auth B]
DODECYL-BETA-D-MALTOSIDE
C24 H46 O11
NLEBIOOXCVAHBD-QKMCSOCLSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.1
MODEL REFINEMENTPHENIX1.19

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research Foundation (DFG)GermanyBo1150/15-1
German Research Foundation (DFG)GermanyINST 93/903-1 FUGG

Revision History  (Full details and data files)

  • Version 1.0: 2021-09-01
    Type: Initial release