7OMQ

SaFtsZ complexed with GDPPCP and Mn2+


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 0.187 
  • R-Value Work: 0.161 
  • R-Value Observed: 0.162 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

FtsZ filament structures in different nucleotide states reveal the mechanism of assembly dynamics.

Ruiz, F.M.Huecas, S.Santos-Aledo, A.Prim, E.A.Andreu, J.M.Fernandez-Tornero, C.

(2022) PLoS Biol 20: e3001497-e3001497

  • DOI: https://doi.org/10.1371/journal.pbio.3001497
  • Primary Citation of Related Structures:  
    7OHH, 7OHK, 7OHL, 7OHN, 7OI2, 7OJA, 7OJB, 7OJC, 7OJD, 7OJZ, 7OMJ, 7OMP, 7OMQ, 7ON2, 7ON3, 7ON4

  • PubMed Abstract: 

    Treadmilling protein filaments perform essential cellular functions by growing from one end while shrinking from the other, driven by nucleotide hydrolysis. Bacterial cell division relies on the primitive tubulin homolog FtsZ, a target for antibiotic discovery that assembles into single treadmilling filaments that hydrolyse GTP at an active site formed upon subunit association. We determined high-resolution filament structures of FtsZ from the pathogen Staphylococcus aureus in complex with different nucleotide analogs and cations, including mimetics of the ground and transition states of catalysis. Together with mutational and biochemical analyses, our structures reveal interactions made by the GTP γ-phosphate and Mg2+ at the subunit interface, a K+ ion stabilizing loop T7 for co-catalysis, new roles of key residues at the active site and a nearby crosstalk area, and rearrangements of a dynamic water shell bridging adjacent subunits upon GTP hydrolysis. We propose a mechanistic model that integrates nucleotide hydrolysis signaling with assembly-associated conformational changes and filament treadmilling. Equivalent assembly mechanisms may apply to more complex tubulin and actin cytomotive filaments that share analogous features with FtsZ.


  • Organizational Affiliation

    Centro de Investigaciones Biológicas Margarita Salas CSIC, Madrid, Spain.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cell division protein FtsZ309Staphylococcus aureusMutation(s): 0 
Gene Names: ftsZ
UniProt
Find proteins for Q2FZ89 (Staphylococcus aureus (strain NCTC 8325 / PS 47))
Explore Q2FZ89 
Go to UniProtKB:  Q2FZ89
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ2FZ89
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 0.187 
  • R-Value Work: 0.161 
  • R-Value Observed: 0.162 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 70.89α = 90
b = 52.055β = 110.336
c = 87.937γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
Aimlessdata scaling
MOLREPphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2022-03-02
    Type: Initial release
  • Version 1.1: 2022-07-20
    Changes: Database references
  • Version 1.2: 2024-01-31
    Changes: Data collection, Refinement description