7OLX

MerTK kinase domain with type 1.5 inhibitor containing a tri-methyl pyrazole group


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.98 Å
  • R-Value Free: 0.251 
  • R-Value Work: 0.203 
  • R-Value Observed: 0.205 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Optimization of an Imidazo[1,2- a ]pyridine Series to Afford Highly Selective Type I1/2 Dual Mer/Axl Kinase Inhibitors with In Vivo Efficacy.

McCoull, W.Boyd, S.Brown, M.R.Coen, M.Collingwood, O.Davies, N.L.Doherty, A.Fairley, G.Goldberg, K.Hardaker, E.He, G.Hennessy, E.J.Hopcroft, P.Hodgson, G.Jackson, A.Jiang, X.Karmokar, A.Laine, A.L.Lindsay, N.Mao, Y.Markandu, R.McMurray, L.McLean, N.Mooney, L.Musgrove, H.Nissink, J.W.M.Pflug, A.Reddy, V.P.Rawlins, P.B.Rivers, E.Schimpl, M.Smith, G.F.Tentarelli, S.Travers, J.Troup, R.I.Walton, J.Wang, C.Wilkinson, S.Williamson, B.Winter-Holt, J.Yang, D.Zheng, Y.Zhu, Q.Smith, P.D.

(2021) J Med Chem 64: 13524-13539

  • DOI: https://doi.org/10.1021/acs.jmedchem.1c00920
  • Primary Citation of Related Structures:  
    7OLS, 7OLV, 7OLX

  • PubMed Abstract: 

    Inhibition of Mer and Axl kinases has been implicated as a potential way to improve the efficacy of current immuno-oncology therapeutics by restoring the innate immune response in the tumor microenvironment. Highly selective dual Mer/Axl kinase inhibitors are required to validate this hypothesis. Starting from hits from a DNA-encoded library screen, we optimized an imidazo[1,2- a ]pyridine series using structure-based compound design to improve potency and reduce lipophilicity, resulting in a highly selective in vivo probe compound 32 . We demonstrated dose-dependent in vivo efficacy and target engagement in Mer- and Axl-dependent efficacy models using two structurally differentiated and selective dual Mer/Axl inhibitors. Additionally, in vivo efficacy was observed in a preclinical MC38 immuno-oncology model in combination with anti-PD1 antibodies and ionizing radiation.


  • Organizational Affiliation

    Oncology R&D, AstraZeneca, Cambridge CB4 0WG, U.K.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Tyrosine-protein kinase Mer298Homo sapiensMutation(s): 4 
Gene Names: MERTKMER
EC: 2.7.10.1
UniProt & NIH Common Fund Data Resources
Find proteins for Q12866 (Homo sapiens)
Explore Q12866 
Go to UniProtKB:  Q12866
PHAROS:  Q12866
GTEx:  ENSG00000153208 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ12866
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.98 Å
  • R-Value Free: 0.251 
  • R-Value Work: 0.203 
  • R-Value Observed: 0.205 
  • Space Group: C 2 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 91.979α = 90
b = 94.598β = 90
c = 71.822γ = 90
Software Package:
Software NamePurpose
autoPROCdata reduction
Aimlessdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
AMoREphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2021-09-15
    Type: Initial release
  • Version 1.1: 2021-09-29
    Changes: Data collection, Database references
  • Version 1.2: 2021-10-06
    Changes: Data collection, Database references
  • Version 1.3: 2024-01-31
    Changes: Data collection, Refinement description