7OIJ

mPI3Kd in complex with an inhibitor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free: 0.276 
  • R-Value Work: 0.236 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Discovery of AZD8154, a Dual PI3K gamma delta Inhibitor for the Treatment of Asthma.

Perry, M.W.D.Bjorhall, K.Bold, P.Brulls, M.Borjesson, U.Carlsson, J.Chang, H.A.Chen, Y.Eriksson, A.Fihn, B.M.Fransson, R.Fredlund, L.Ge, H.Huang, H.Karabelas, K.Lamm Bergstrom, E.Lever, S.Lindmark, H.Mogemark, M.Nikitidis, A.Palmgren, A.P.Pemberton, N.Petersen, J.Rodrigo Blomqvist, M.Smith, R.W.Thomas, M.J.Ullah, V.Tyrchan, C.Wennberg, T.Westin Eriksson, A.Yang, W.Zhao, S.Oster, L.

(2021) J Med Chem 64: 8053-8075

  • DOI: https://doi.org/10.1021/acs.jmedchem.1c00434
  • Primary Citation of Related Structures:  
    7OI4, 7OIJ, 7OIL, 7OIS

  • PubMed Abstract: 

    Starting from our previously described PI3Kγ inhibitors, we describe the exploration of structure-activity relationships that led to the discovery of highly potent dual PI3Kγδ inhibitors. We explored changes in two positions of the molecules, including macrocyclization, but ultimately identified a simpler series with the desired potency profile that had suitable physicochemical properties for inhalation. We were able to demonstrate efficacy in a rat ovalbumin challenge model of allergic asthma and in cells derived from asthmatic patients. The optimized compound, AZD8154, has a long duration of action in the lung and low systemic exposure coupled with high selectivity against off-targets.


  • Organizational Affiliation

    Medicinal Chemistry, Research and Early Development, Respiratory and Immunology (R&I), BioPharmaceuticals R&D, AstraZeneca, Gothenburg SE-431 83, Sweden.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoformA [auth AAA]1,084Mus musculusMutation(s): 0 
Gene Names: Pik3cd
EC: 2.7.1.137 (PDB Primary Data), 2.7.1.153 (PDB Primary Data)
UniProt
Find proteins for O35904 (Mus musculus)
Explore O35904 
Go to UniProtKB:  O35904
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO35904
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
VEH (Subject of Investigation/LOI)
Query on VEH

Download Ideal Coordinates CCD File 
B [auth AAA]6-[[5-[2-[(1S)-1-cyclopropylethyl]-7-(methylsulfamoyl)-1-oxidanylidene-3H-isoindol-5-yl]-4-methyl-1,3-thiazol-2-yl]amino]-N-[3-(dimethylamino)propyl]pyridine-2-carboxamide
C29 H37 N7 O4 S2
SMMGDTUHUMCVSB-SFHVURJKSA-N
PGE
Query on PGE

Download Ideal Coordinates CCD File 
D [auth AAA]TRIETHYLENE GLYCOL
C6 H14 O4
ZIBGPFATKBEMQZ-UHFFFAOYSA-N
NA
Query on NA

Download Ideal Coordinates CCD File 
C [auth AAA]SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free: 0.276 
  • R-Value Work: 0.236 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 141.805α = 90
b = 64.839β = 103.655
c = 116.582γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
MOLREPphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

  • Released Date: 2021-07-14 
  • Deposition Author(s): Petersen, J.

Revision History  (Full details and data files)

  • Version 1.0: 2021-07-14
    Type: Initial release
  • Version 1.1: 2021-09-29
    Changes: Advisory, Database references, Structure summary