Human Cyclophilin D in complex with N-(5-ethyl-4-oxo-1,2,3,4,5,6-hexahydro-1,5-benzodiazocin-8-yl)-7methyl-2-oxo-1H,2H-pyrazolo[1,5-a]pyrimidine-6-carboxamide
Silva, D.O., Graedler, U., Bandeiras, T.M.To be published.
Experimental Data Snapshot
A newer entry is available that reflects an alternative modeling of the original data: 7R2H
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Peptidyl-prolyl cis-trans isomerase F, mitochondrial | 165 | Homo sapiens | Mutation(s): 1  Gene Names: PPIF, CYP3 EC: 5.2.1.8 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P30405 (Homo sapiens) Explore P30405  Go to UniProtKB:  P30405 | |||||
PHAROS:  P30405 GTEx:  ENSG00000108179  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P30405 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
VDH (Subject of Investigation/LOI) Query on VDH | B [auth A] | N-(5-ethyl-4-oxidanylidene-1,2,3,6-tetrahydro-1,5-benzodiazocin-8-yl)-7-methyl-2-oxidanylidene-1H-pyrazolo[1,5-a]pyrimidine-6-carboxamide C20 H22 N6 O3 OCCBDBRLOQJNFE-UHFFFAOYSA-N | |||
PG4 (Subject of Investigation/LOI) Query on PG4 | D [auth A] | TETRAETHYLENE GLYCOL C8 H18 O5 UWHCKJMYHZGTIT-UHFFFAOYSA-N | |||
DMS (Subject of Investigation/LOI) Query on DMS | C [auth A] | DIMETHYL SULFOXIDE C2 H6 O S IAZDPXIOMUYVGZ-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 56.735 | α = 90 |
b = 56.735 | β = 90 |
c = 87.305 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
PHENIX | refinement |
autoPROC | data reduction |
autoPROC | data scaling |
PHASER | phasing |