7OA4

Crystal structure of the N-terminal endonuclease domain of La Crosse virus L-protein bound to compound L-742,001

PDB DOI: https://doi.org/10.2210/pdb7OA4/pdb

Classification: TRANSFERASE
Organism(s): La Crosse virus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2021-04-19 Released: 2022-08-03
Deposition Author(s): Feracci, M., Hernandez, S., Vincentelli, R., Ferron, F., Reguera, J., Canard, B., Alvarez, K.
Funding Organization(s): Agence Nationale de la Recherche (ANR)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.90 Å
R-Value Free: 0.239
R-Value Work: 0.197

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of the N-terminal endonuclease domain of La Crosse virus L-protein bound to compound L-742,001

Feracci, M., Hernandez, S., Vincentelli, R., Ferron, F., Reguera, J., Canard, B., Alvarez, K.

To be published.

Macromolecule Content

Total Structure Weight: 89.26 kDa
Atom Count: 6,386
Modelled Residue Count: 736
Deposited Residue Count: 736
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
N-terminal endonuclease domain of La Crosse virus L-protein	A [auth AAA], B [auth BBB], C [auth DDD], D [auth GGG]	184	La Crosse virus	Mutation(s): 0 EC: 2.7.7.48 (PDB Primary Data), 3.1 (PDB Primary Data)
UniProt
Find proteins for A5HC98 (Bunyavirus La Crosse) Explore A5HC98 Go to UniProtKB: A5HC98
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A5HC98
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
0N8 (Subject of Investigation/LOI) Query on 0N8 Download Ideal Coordinates CCD File SDF format, chain E [auth AAA] SDF format, chain J [auth BBB] SDF format, chain N [auth DDD] SDF format, chain S [auth GGG] MOL2 format, chain E [auth AAA] MOL2 format, chain J [auth BBB] MOL2 format, chain N [auth DDD] MOL2 format, chain S [auth GGG]	E [auth AAA], J [auth BBB], N [auth DDD], S [auth GGG]	(2Z)-4-[1-benzyl-4-(4-chlorobenzyl)piperidin-4-yl]-2-hydroxy-4-oxobut-2-enoic acid C₂₃ H₂₄ Cl N O₄ DGJZJCIAWLMRBY-ZHZULCJRSA-N		Interactions Focus chain E [auth AAA] Focus chain J [auth BBB] Focus chain N [auth DDD] Focus chain S [auth GGG] Interactions & Density Focus chain E [auth AAA] Focus chain J [auth BBB] Focus chain N [auth DDD] Focus chain S [auth GGG]
MN Query on MN Download Ideal Coordinates CCD File SDF format, chain Q [auth DDD] SDF format, chain H [auth AAA] SDF format, chain I [auth AAA] SDF format, chain L [auth BBB] SDF format, chain M [auth BBB] SDF format, chain R [auth DDD] SDF format, chain U [auth GGG] SDF format, chain V [auth GGG] MOL2 format, chain Q [auth DDD] MOL2 format, chain H [auth AAA] MOL2 format, chain I [auth AAA] MOL2 format, chain L [auth BBB] MOL2 format, chain M [auth BBB] MOL2 format, chain R [auth DDD] MOL2 format, chain U [auth GGG] MOL2 format, chain V [auth GGG]	H [auth AAA] I [auth AAA] L [auth BBB] M [auth BBB] Q [auth DDD] H [auth AAA], I [auth AAA], L [auth BBB], M [auth BBB], Q [auth DDD], R [auth DDD], U [auth GGG], V [auth GGG]	MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N		Interactions Focus chain H [auth AAA] Focus chain I [auth AAA] Focus chain L [auth BBB] Focus chain M [auth BBB] Focus chain Q [auth DDD] Focus chain R [auth DDD] Focus chain U [auth GGG] Focus chain V [auth GGG] Interactions & Density Focus chain H [auth AAA] Focus chain I [auth AAA] Focus chain L [auth BBB] Focus chain M [auth BBB] Focus chain Q [auth DDD] Focus chain R [auth DDD] Focus chain U [auth GGG] Focus chain V [auth GGG]
FMT Query on FMT Download Ideal Coordinates CCD File SDF format, chain P [auth DDD] SDF format, chain F [auth AAA] SDF format, chain G [auth AAA] SDF format, chain K [auth BBB] SDF format, chain O [auth DDD] SDF format, chain T [auth GGG] MOL2 format, chain P [auth DDD] MOL2 format, chain F [auth AAA] MOL2 format, chain G [auth AAA] MOL2 format, chain K [auth BBB] MOL2 format, chain O [auth DDD] MOL2 format, chain T [auth GGG]	F [auth AAA] G [auth AAA] K [auth BBB] O [auth DDD] P [auth DDD] F [auth AAA], G [auth AAA], K [auth BBB], O [auth DDD], P [auth DDD], T [auth GGG]	FORMIC ACID C H₂ O₂ BDAGIHXWWSANSR-UHFFFAOYSA-N		Interactions Focus chain F [auth AAA] Focus chain G [auth AAA] Focus chain K [auth BBB] Focus chain O [auth DDD] Focus chain P [auth DDD] Focus chain T [auth GGG] Interactions & Density Focus chain F [auth AAA] Focus chain G [auth AAA] Focus chain K [auth BBB] Focus chain O [auth DDD] Focus chain P [auth DDD] Focus chain T [auth GGG]