7O74 | pdb_00007o74

Structure of cyanase from Pseudomonas lactis

PDB DOI: https://doi.org/10.2210/pdb7O74/pdb

Classification: LYASE
Organism(s): Pseudomonas lactis
Mutation(s): No

Deposited: 2021-04-12 Released: 2021-04-21
Deposition Author(s): Brag, S., Driller, J.H., Pedersen, B.P.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.61 Å
R-Value Free:
0.190 (Depositor), 0.190 (DCC)
R-Value Work:
0.164 (Depositor), 0.164 (DCC)
R-Value Observed:
0.164 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 7O74

This is version 1.1 of the entry. See complete history.

Literature

Structure determination and analysis of unintentionally crystallized cyanase from Pseudomonas lactis

Brag, S., Driller, J.H., Pedersen, B.P.

To be published.

Macromolecule Content

Total Structure Weight: 169.7 kDa
Atom Count: 13,985
Modeled Residue Count: 1,560
Deposited Residue Count: 1,560
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cyanate hydratase	A, B, C, D, E A, B, C, D, E, F, G, H, I, J	156	Pseudomonas lactis	Mutation(s): 0 EC: 4.2.1.104
UniProt
Find proteins for A0A218ZZ45 (Pseudomonas lactis) Explore A0A218ZZ45 Go to UniProtKB: A0A218ZZ45
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A218ZZ45
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
CL Query on CL Download:Ideal Coordinates CCD File SDF format, chain K [auth A] SDF format, chain L [auth B] SDF format, chain M [auth C] SDF format, chain N [auth D] SDF format, chain O [auth E] SDF format, chain P [auth G] SDF format, chain Q [auth H] SDF format, chain R [auth I] SDF format, chain S [auth J] MOL2 format, chain K [auth A] MOL2 format, chain L [auth B] MOL2 format, chain M [auth C] MOL2 format, chain N [auth D] MOL2 format, chain O [auth E] MOL2 format, chain P [auth G] MOL2 format, chain Q [auth H] MOL2 format, chain R [auth I] MOL2 format, chain S [auth J] mmCIF format, chain K [auth A] mmCIF format, chain L [auth B] mmCIF format, chain M [auth C] mmCIF format, chain N [auth D] mmCIF format, chain O [auth E] mmCIF format, chain P [auth G] mmCIF format, chain Q [auth H] mmCIF format, chain R [auth I] mmCIF format, chain S [auth J]	K [auth A] L [auth B] M [auth C] N [auth D] O [auth E] K [auth A], L [auth B], M [auth C], N [auth D], O [auth E], P [auth G], Q [auth H], R [auth I], S [auth J]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Interactions Focus chain K [auth A] Focus chain L [auth B] Focus chain M [auth C] Focus chain N [auth D] Focus chain O [auth E] Focus chain P [auth G] Focus chain Q [auth H] Focus chain R [auth I] Focus chain S [auth J] Interactions & Density Focus chain K [auth A] Focus chain L [auth B] Focus chain M [auth C] Focus chain N [auth D] Focus chain O [auth E] Focus chain P [auth G] Focus chain Q [auth H] Focus chain R [auth I] Focus chain S [auth J]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.61 Å
R-Value Free: 0.190 (Depositor), 0.190 (DCC)
R-Value Work: 0.164 (Depositor), 0.164 (DCC)
R-Value Observed: 0.164 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 130.146	α = 90
b = 117.592	β = 94.26
c = 106.991	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling
PHASER	phasing
PDB_EXTRACT	data extraction

Structure Validation

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Entry History

Deposition Data

Released Date: 2021-04-21

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2021-04-21
Type: Initial release
Version 1.1: 2024-01-31
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.