7O39

Crystal structure of S. aureus DivIVA N terminal domain

• PDB DOI: https://doi.org/10.2210/pdb7O39/pdb

• Classification: PROTEIN BINDING
• Organism(s): Staphylococcus aureus subsp. aureus NCTC 8325
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2021-04-01 Released: 2021-04-14 
• Deposition Author(s): Rao, V.A., Booth, S., Lewis, R.J.
• Funding Organization(s): Medical Research Council (MRC, United Kingdom)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.30 Å
• R-Value Free: 0.185 
• R-Value Work: 0.160 
• R-Value Observed: 0.161 

Literature

Crystal structure of S. aureus DivIVA N terminal domain

Rao, V.A., Booth, S., Lewis, R.J.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: light scattering, SAXS

Macromolecule Content

• Total Structure Weight: 13.82 kDa 
• Atom Count: 999 
• Modelled Residue Count: 102 
• Deposited Residue Count: 118 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
DivIVA	A, B	59	Staphylococcus aureus subsp. aureus NCTC 8325	Mutation(s): 0  Gene Names: SAOUHSC_01158
UniProt
Find proteins for Q2FZ83 (Staphylococcus aureus (strain NCTC 8325 / PS 47)) Explore Q2FZ83  Go to UniProtKB:  Q2FZ83

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.30 Å
• R-Value Free: 0.185 
• R-Value Work: 0.160 
• R-Value Observed: 0.161 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 28.108	α = 90
b = 39.175	β = 90
c = 111.249	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
xia2	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2021-04-14 
Deposition Author(s): Rao, V.A., Booth, S., Lewis, R.J.

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Funding Organization	Location	Grant Number
Medical Research Council (MRC, United Kingdom)	United Kingdom	MR/N002679/1

Revision History  

• Version 1.0: 2021-04-14
  Type: Initial release
  
• Version 1.1: 2024-01-31
  Changes: Data collection, Database references, Refinement description