7O0B | pdb_00007o0b

TRIM3 Filamin domain

• PDB DOI: https://doi.org/10.2210/pdb7O0B/pdb

• Classification: RNA BINDING PROTEIN
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2021-03-26 Released: 2022-04-13 
• Deposition Author(s): Williams, F.P., Yikilmazsoy, A., Hennig, J.
• Funding Organization(s): German Research Foundation (DFG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.13 Å
• R-Value Free: 
  0.258 (Depositor), 0.260 (DCC) 
• R-Value Work: 
  0.227 (Depositor), 0.230 (DCC) 
• R-Value Observed: 
  0.228 (Depositor) 

Starting Model: experimental

Literature

TRIM3 Filamin domain

Williams, F.P., Yikilmazsoy, A., Hennig, J.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 11.31 kDa 
• Atom Count: 851 
• Modeled Residue Count: 104 
• Deposited Residue Count: 106 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Tripartite motif-containing protein 3	A	106	Homo sapiens	Mutation(s): 0  Gene Names: TRIM3, BERP, RNF22, RNF97 EC: 2.3.2.27
UniProt & NIH Common Fund Data Resources
Find proteins for O75382 (Homo sapiens) Explore O75382  Go to UniProtKB:  O75382
PHAROS:  O75382 GTEx:  ENSG00000110171

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.13 Å
• R-Value Free:  0.258 (Depositor), 0.260 (DCC) 
• R-Value Work:  0.227 (Depositor), 0.230 (DCC) 
• R-Value Observed: 0.228 (Depositor) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 56.017	α = 90
b = 33.504	β = 117.253
c = 58.844	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling
PHASER	phasing
Coot	model building

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2022-04-13 
Deposition Author(s): Williams, F.P., Yikilmazsoy, A., Hennig, J.

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Funding Organization	Location	Grant Number
German Research Foundation (DFG)	Germany	SPP1935

Revision History  

• Version 1.0: 2022-04-13
  Type: Initial release
  
• Version 1.1: 2024-01-31
  Changes: Data collection, Refinement description