7NYQ

Crystal structure of the Mei-P26 NHL domain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.60 Å
  • R-Value Free: 0.215 
  • R-Value Work: 0.196 
  • R-Value Observed: 0.196 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Molecular insights into RNA recognition and gene regulation by the TRIM-NHL protein Mei-P26.

Salerno-Kochan, A.Horn, A.Ghosh, P.Nithin, C.Koscielniak, A.Meindl, A.Strauss, D.Krutyholowa, R.Rossbach, O.Bujnicki, J.M.Gaik, M.Medenbach, J.Glatt, S.

(2022) Life Sci Alliance 5

  • DOI: https://doi.org/10.26508/lsa.202201418
  • Primary Citation of Related Structures:  
    7NYQ

  • PubMed Abstract: 

    The TRIM-NHL protein Meiotic P26 (Mei-P26) acts as a regulator of cell fate in Drosophila Its activity is critical for ovarian germline stem cell maintenance, differentiation of oocytes, and spermatogenesis. Mei-P26 functions as a post-transcriptional regulator of gene expression; however, the molecular details of how its NHL domain selectively recognizes and regulates its mRNA targets have remained elusive. Here, we present the crystal structure of the Mei-P26 NHL domain at 1.6 Å resolution and identify key amino acids that confer substrate specificity and distinguish Mei-P26 from closely related TRIM-NHL proteins. Furthermore, we identify mRNA targets of Mei-P26 in cultured Drosophila cells and show that Mei-P26 can act as either a repressor or activator of gene expression on different RNA targets. Our work reveals the molecular basis of RNA recognition by Mei-P26 and the fundamental functional differences between otherwise very similar TRIM-NHL proteins.


  • Organizational Affiliation

    Malopolska Centre of Biotechnology, Jagiellonian University, Krakow, Poland.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Meiotic P26, isoform C
A, B
301Drosophila melanogasterMutation(s): 0 
Gene Names: mei-P26AF145661BcDNA:GH10646Dmel\CG12218MEI-P26meiP26CG12218Dmel_CG12218
UniProt
Find proteins for M9PH32 (Drosophila melanogaster)
Explore M9PH32 
Go to UniProtKB:  M9PH32
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupM9PH32
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.60 Å
  • R-Value Free: 0.215 
  • R-Value Work: 0.196 
  • R-Value Observed: 0.196 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 34.71α = 90
b = 116.5β = 96.36
c = 64.7γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
XSCALEdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Polish National Science CentrePoland2015/19/P/NZ1/02514
Polish National Science CentrePoland2019/32/T/NZ1/00420
Foundation for Polish SciencePolandTECH CORE FACILITY/2017-4/6

Revision History  (Full details and data files)

  • Version 1.0: 2022-05-04
    Type: Initial release
  • Version 1.1: 2022-05-18
    Changes: Database references
  • Version 1.2: 2024-01-31
    Changes: Data collection, Refinement description