7NH3

Nematocida Huwe1 in open conformation.

PDB DOI: https://doi.org/10.2210/pdb7NH3/pdb
EM Map EMD-12319: EMDB EMDataResource

Classification: LIGASE
Organism(s): Nematocida sp. ERTm5
Expression System: Spodoptera frugiperda
Mutation(s): No

Deposited: 2021-02-09 Released: 2022-03-02
Deposition Author(s): Petrova, O., Grishkovskaya, I., Grabarczyk, D.B., Kessler, D., Haselbach, D., Clausen, T.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 6.37 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of HUWE1: One ring to ubiquitinate them all

Grabarrczyk, D.B., Petrova, O.A., Haselbach, D., Kessler, D., Clausen, T.

To be published.

Macromolecule Content

Total Structure Weight: 287.75 kDa
Atom Count: 17,417
Modelled Residue Count: 2,138
Deposited Residue Count: 2,490
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
E3 ubiquitin-protein ligase HUWE1	A	2,490	Nematocida sp. ERTm5	Mutation(s): 0 Gene Names: NEIG_01557
UniProt
Find proteins for A0A177ELV2 (Nematocida sp. ERTm5) Explore A0A177ELV2 Go to UniProtKB: A0A177ELV2
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A177ELV2
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 6.37 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
RECONSTRUCTION	RELION	3.1

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2022-03-02

Deposition Author(s):

Grishkovskaya, I.

Grabarczyk, D.B.

Revision History (Full details and data files)

Version 1.0: 2022-03-02
Type: Initial release
Version 1.1: 2023-05-24
Changes: Refinement description, Structure summary
Version 1.2: 2023-07-26
Changes: Other

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.