7NEN | pdb_00007nen

Crystal structure of outer surface protein C (OspC) from Borrelia garinii

• PDB DOI: https://doi.org/10.2210/pdb7NEN/pdb

• Classification: UNKNOWN FUNCTION
• Organism(s): Borreliella garinii
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2021-02-04 Released: 2021-04-07 
• Deposition Author(s): Sliwiak, J., Bierwagen, P., Ruszkowski, M., Jaskolski, M., Urbanowicz, A.
• Funding Organization(s): Polish National Science Centre

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.98 Å
• R-Value Free: 
  0.328 (Depositor), 0.330 (DCC) 
• R-Value Work: 
  0.255 (Depositor), 0.260 (DCC) 
• R-Value Observed: 
  0.260 (Depositor) 

Starting Model: experimental

Literature

Structural studies of outer surface proteins (OspC) from different Borrelia strains

Sliwiak, J., Bierwagen, P., Ruszkowski, M., Jaskolski, M., Urbanowicz, A.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 18.65 kDa 
• Atom Count: 1,349 
• Modeled Residue Count: 160 
• Deposited Residue Count: 176 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Outer surface protein C	A	176	Borreliella garinii	Mutation(s): 0
UniProt
Find proteins for H6VGK2 (Borreliella garinii) Explore H6VGK2  Go to UniProtKB:  H6VGK2

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.98 Å
• R-Value Free:  0.328 (Depositor), 0.330 (DCC) 
• R-Value Work:  0.255 (Depositor), 0.260 (DCC) 
• R-Value Observed: 0.260 (Depositor) 

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 46	α = 90
b = 151.85	β = 90
c = 57.94	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XSCALE	data scaling
PDB_EXTRACT	data extraction
XDS	data reduction
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2021-04-07 
Deposition Author(s): Sliwiak, J., Bierwagen, P., Ruszkowski, M., Jaskolski, M., Urbanowicz, A.

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Funding Organization	Location	Grant Number
Polish National Science Centre	Poland	2015/17/B/NZ1/ 00873

Revision History  

• Version 1.0: 2021-04-07
  Type: Initial release
  
• Version 1.1: 2024-01-31
  Changes: Data collection, Database references, Refinement description