7NCY

Dual specificity phosphatase from Sulfolobales Beppu filamentous virus 3

• PDB DOI: https://doi.org/10.2210/pdb7NCY/pdb

• Classification: VIRAL PROTEIN
• Organism(s): Sulfolobales Beppu filamentous virus 3
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2021-01-29 Released: 2022-03-02 
• Deposition Author(s): Welin, M., Akutsu, M., Hakansson, M., Al-Karadaghi, S., Jasilionis, A., Nordberg Karlsson, E.
• Funding Organization(s): European Research Council (ERC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 0.220 
• R-Value Work: 0.176 

Literature

Dual specificity phosphatase from Sulfolobales Beppu filamentous virus 3

Welin, M., Akutsu, M., Hakansson, M., Al-Karadaghi, S., Jasilionis, A., Nordberg Karlsson, E.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 32.74 kDa 
• Atom Count: 2,365 
• Modelled Residue Count: 263 
• Deposited Residue Count: 272 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Dual specificity phosphatase	A, B	136	Sulfolobales Beppu filamentous virus 3	Mutation(s): 0  Gene Names: SBFV3_gp41
UniProt
Find proteins for A0A3Q8Q3X3 (Sulfolobales Beppu filamentous virus 3) Explore A0A3Q8Q3X3  Go to UniProtKB:  A0A3Q8Q3X3

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
GOL	C [auth A], E [auth B]	GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N
NI	D [auth A], F [auth B]	NICKEL (II) ION Ni VEQPNABPJHWNSG-UHFFFAOYSA-N

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A, B	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 0.220 
• R-Value Work: 0.176 
• Space Group: P 3₁ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 59.62	α = 90
b = 59.62	β = 90
c = 167.123	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XDS	data scaling
SHARP	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2022-03-02 
Deposition Author(s): Welin, M., Akutsu, M., Hakansson, M., Al-Karadaghi, S., Jasilionis, A., Nordberg Karlsson, E.

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Funding Organization	Location	Grant Number
European Research Council (ERC)	European Union	685778

Revision History  

• Version 1.0: 2022-03-02
  Type: Initial release