7N9V

CA-targeting nanobody is a tool for studying HIV-1 capsid lattice interactions


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.45 Å
  • R-Value Free: 0.258 
  • R-Value Work: 0.212 
  • R-Value Observed: 0.215 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

CA-targeting nanobody is a tool for studying HIV-1 capsid lattice interactions

Gerber, E.E.Digiananttonio, K.M.Tripler, T.N.Smaga, S.S.Summers, B.J.Xiong, Y.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Capsid protein223Human immunodeficiency virus 1Mutation(s): 0 
Gene Names: gag
UniProt
Find proteins for B6DRA0 (Human immunodeficiency virus 1)
Explore B6DRA0 
Go to UniProtKB:  B6DRA0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupB6DRA0
Protein Feature View
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  • Reference Sequence
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Nanobody-GYAR113Lama glamaMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.45 Å
  • R-Value Free: 0.258 
  • R-Value Work: 0.212 
  • R-Value Observed: 0.215 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 102.548α = 90
b = 140.378β = 113.896
c = 125.186γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
DENZOdata reduction
HKL-2000data scaling
PDB_EXTRACTdata extraction
PHASERphasing

Structure Validation

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Entry History & Funding Information

Deposition Data

  • Deposited Date: 2021-06-18 
  • Released Date: 2022-06-22 
  • Deposition Author(s): Tripler, T.N.

Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesP50GM082251
National Institutes of Health/National Cancer Institute (NIH/NCI)United StatesF32 GM131426 01A1

Revision History  (Full details and data files)

  • Version 1.0: 2022-06-22
    Type: Initial release