7N15

Structure of TAX-4_R421W w/cGMP open state


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structural and functional characterization of an achromatopsia-associated mutation in a phototransduction channel.

Zheng, X.Li, H.Hu, Z.Su, D.Yang, J.

(2022) Commun Biol 5: 190-190

  • DOI: https://doi.org/10.1038/s42003-022-03120-6
  • Primary Citation of Related Structures:  
    7N15, 7N16, 7N17

  • PubMed Abstract: 

    Numerous missense mutations in cyclic nucleotide-gated (CNG) channels cause achromatopsia and retinitis pigmentosa, but the underlying pathogenic mechanisms are often unclear. We investigated the structural basis and molecular/cellular effects of R410W, an achromatopsia-associated, presumed loss-of-function mutation in human CNGA3. Cryo-EM structures of the Caenorhabditis elegans TAX-4 CNG channel carrying the analogous mutation, R421W, show that most apo channels are open. R421, located in the gating ring, interacts with the S4 segment in the closed state. R421W disrupts this interaction, destabilizes the closed state, and stabilizes the open state. CNGA3_R410W/CNGB3 and TAX4_R421W channels are spontaneously active without cGMP and induce cell death, suggesting cone degeneration triggered by spontaneous CNG channel activity as a possible cause of achromatopsia. Our study sheds new light on CNG channel allosteric gating, provides an impetus for a reevaluation of reported loss-of-function CNG channel missense disease mutations, and has implications for mutation-specific treatment of retinopathy.


  • Organizational Affiliation

    Department of Biological Sciences, Columbia University, New York, NY, 10027, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cyclic nucleotide-gated cation channel
A, B, C, D
738Caenorhabditis elegansMutation(s): 1 
Gene Names: tax-4ZC84.2
Membrane Entity: Yes 
UniProt
Find proteins for Q03611 (Caenorhabditis elegans)
Explore Q03611 
Go to UniProtKB:  Q03611
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ03611
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
CPL (Subject of Investigation/LOI)
Query on CPL

Download Ideal Coordinates CCD File 
AA [auth D]
BA [auth D]
CA [auth D]
DA [auth D]
F [auth A]
AA [auth D],
BA [auth D],
CA [auth D],
DA [auth D],
F [auth A],
FA [auth D],
G [auth A],
H [auth A],
I [auth A],
K [auth A],
M [auth B],
N [auth B],
O [auth B],
P [auth B],
R [auth B],
T [auth C],
U [auth C],
V [auth C],
W [auth C],
Y [auth C]
1-PALMITOYL-2-LINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE
C42 H80 N O8 P
JLPULHDHAOZNQI-ZTIMHPMXSA-N
PX2 (Subject of Investigation/LOI)
Query on PX2

Download Ideal Coordinates CCD File 
EA [auth D],
J [auth A],
Q [auth B],
X [auth C]
1,2-DILAUROYL-SN-GLYCERO-3-PHOSPHATE
C27 H52 O8 P
OKLASJZQBDJAPH-RUZDIDTESA-M
PCG
Query on PCG

Download Ideal Coordinates CCD File 
E [auth A],
L [auth B],
S [auth C],
Z [auth D]
CYCLIC GUANOSINE MONOPHOSPHATE
C10 H12 N5 O7 P
ZOOGRGPOEVQQDX-UUOKFMHZSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC
MODEL REFINEMENTPHENIX

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Eye Institute (NIH/NEI)United StatesR01EY027800
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR01GM085234

Revision History  (Full details and data files)

  • Version 1.0: 2022-03-16
    Type: Initial release