7MMX | pdb_00007mmx

CutN from Type I Cut MCP

PDB DOI: https://doi.org/10.2210/pdb7MMX/pdb

Classification: STRUCTURAL PROTEIN
Organism(s): Streptococcus intermedius SK54 = ATCC 27335
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2021-04-30 Released: 2021-09-08
Deposition Author(s): Ochoa, J.M., Sawaya, M.R., Yeates, T.O.
Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free:
0.236 (Depositor), 0.229 (DCC)
R-Value Work:
0.212 (Depositor), 0.201 (DCC)
R-Value Observed:
0.214 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

Structural characterization of hexameric shell proteins from two types of choline-utilization bacterial microcompartments

Ochoa, J.M., Mijares, O., Acosta, A.A., Escoto, X., Leon-Rivera, N., Marshall, J.D., Sawaya, M.R., Yeates, T.O.

(2021) Acta Crystallogr F Struct Biol Commun 77: 275-285

DOI: https://doi.org/10.1107/S2053230X21007470

Macromolecule Content

Total Structure Weight: 61.94 kDa
Atom Count: 3,798
Modeled Residue Count: 522
Deposited Residue Count: 594
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Propanediol utilization protein PduA	A, B, C, D, E A, B, C, D, E, F	99	Streptococcus intermedius SK54 = ATCC 27335	Mutation(s): 1 Gene Names: HMPREF1654_00408

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SO4 Query on SO4 Download:Ideal Coordinates CCD File SDF format, chain J [auth E] SDF format, chain I [auth C] SDF format, chain H [auth C] SDF format, chain G [auth A] MOL2 format, chain J [auth E] MOL2 format, chain I [auth C] MOL2 format, chain H [auth C] MOL2 format, chain G [auth A] mmCIF format, chain J [auth E] mmCIF format, chain I [auth C] mmCIF format, chain H [auth C] mmCIF format, chain G [auth A]	G [auth A], H [auth C], I [auth C], J [auth E]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain G [auth A] Focus chain H [auth C] Focus chain I [auth C] Focus chain J [auth E] Interactions & Density Focus chain G [auth A] Focus chain H [auth C] Focus chain I [auth C] Focus chain J [auth E]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free: 0.236 (Depositor), 0.229 (DCC)
R-Value Work: 0.212 (Depositor), 0.201 (DCC)
R-Value Observed: 0.214 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 107.5	α = 90
b = 49.66	β = 93.83
c = 92.41	γ = 90

Software Package:

Software Name	Purpose
BUSTER	refinement
XSCALE	data scaling
PHASER	phasing
PDB_EXTRACT	data extraction
XDS	data reduction

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2021-09-08

Deposition Author(s):

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)	United States	--

Revision History (Full details and data files)

Version 1.0: 2021-09-08
Type: Initial release
Version 1.1: 2023-10-18
Changes: Data collection, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.