7MIW | pdb_00007miw

Crystal Structure of Fumarate hydratase class II from Elizabethkingia anophelis NUHP1

• PDB DOI: https://doi.org/10.2210/pdb7MIW/pdb

• Classification: LYASE
• Organism(s): Elizabethkingia anophelis NUHP1
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2021-04-18 Released: 2021-04-28 
• Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.25 Å
• R-Value Free: 
  0.147 (Depositor), 0.150 (DCC) 
• R-Value Work: 
  0.124 (Depositor), 0.120 (DCC) 
• R-Value Observed: 
  0.124 (Depositor) 

Starting Model: experimental

Literature

Crystal Structure of Fumarate hydratase class II from Elizabethkingia anophelis NUHP1

Abendroth, J., Lorimer, D.D., Horanyi, P.S., Edwards, T.E.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 206.92 kDa 
• Atom Count: 17,297 
• Modeled Residue Count: 1,854 
• Deposited Residue Count: 1,888 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Fumarate hydratase class II	A, B, C, D	472	Elizabethkingia anophelis NUHP1	Mutation(s): 0  Gene Names: fumC, BD94_3912 EC: 4.2.1.2
UniProt
Find proteins for A0A077EJP9 (Elizabethkingia anophelis NUHP1) Explore A0A077EJP9  Go to UniProtKB:  A0A077EJP9

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
EDO	E [auth A], F [auth B]	1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.25 Å
• R-Value Free:  0.147 (Depositor), 0.150 (DCC) 
• R-Value Work:  0.124 (Depositor), 0.120 (DCC) 
• R-Value Observed: 0.124 (Depositor) 

Diffraction Data: https://doi.org/10.18430/m37miw

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 59.76	α = 116.151
b = 92.65	β = 107.668
c = 98.43	γ = 90.032

Software Package:

Software Name	Purpose
XDS	data reduction
XSCALE	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
MoRDa	phasing
ARP/wARP	model building
PHENIX	model building
Coot	model building

Structure Validation

Entry History 

Deposition Data

• Released Date: 2021-04-28 
Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Revision History  

• Version 1.0: 2021-04-28
  Type: Initial release
  
• Version 1.1: 2023-10-18
  Changes: Data collection, Database references, Refinement description