7MHD | pdb_00007mhd

Thioesterase Domain of Human Fatty Acid Synthase (FASN-TE) binding a competitive inhibitor SBP-7635

PDB DOI: https://doi.org/10.2210/pdb7MHD/pdb

Classification: Hydrolase/Inhibitor
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2021-04-15 Released: 2022-04-20
Deposition Author(s): Aleshin, A.E., Lambert, L., Liddington, R.C., Cosford, N.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.03 Å
R-Value Free:
0.246 (Depositor), 0.250 (DCC)
R-Value Work:
0.193 (Depositor), 0.200 (DCC)
R-Value Observed:
0.196 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Thioesterase Domain of Human Fatty Acid Synthase (FASN-TE) binding a competitive inhibitor SBP-7635

Aleshin, A.E., Lambert, L., Liddington, R.C., Cosford, N.

To be published.

Macromolecule Content

Total Structure Weight: 32.93 kDa
Atom Count: 2,374
Modeled Residue Count: 282
Deposited Residue Count: 298
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Fatty acid synthase	A	298	Homo sapiens	Mutation(s): 0 Gene Names: FASN, FAS EC: 3.1.2.14 (PDB Primary Data), 2.3.1.85 (UniProt), 2.3.1.41 (UniProt), 1.3.1.39 (UniProt), 2.3.1.38 (UniProt), 4.2.1.59 (UniProt), 1.1.1.100 (UniProt), 2.3.1.39 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for P49327 (Homo sapiens) Explore P49327 Go to UniProtKB: P49327
PHAROS: P49327 GTEx: ENSG00000169710
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P49327
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ZEP (Subject of Investigation/LOI) Query on ZEP Download Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	N,N-diethyl-4-{2-[(2-fluorophenyl)methyl]-1,3-thiazol-4-yl}benzene-1-sulfonamide C₂₀ H₂₁ F N₂ O₂ S₂ PZNJPNGENGJLBG-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.03 Å
R-Value Free: 0.246 (Depositor), 0.250 (DCC)
R-Value Work: 0.193 (Depositor), 0.200 (DCC)
R-Value Observed: 0.196 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 53.886	α = 90
b = 61.486	β = 90
c = 77.45	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

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Ligand Structure Quality Assessment

Entry History

Deposition Data

Released Date: 2022-04-20

Deposition Author(s):

Liddington, R.C.

Revision History (Full details and data files)

Version 1.0: 2022-04-20
Type: Initial release
Version 1.1: 2023-10-18
Changes: Data collection, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.