7ME5

Structure of the extracellular WNT-binding module in Drl-2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.230 
  • R-Value Observed: 0.232 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.0 of the entry. See complete history


Literature

Structures of extracellular WNT-binding modules in ROR and RYK family receptor tyrosine kinases

Shi, F.Mendrola, J.M.Sheetz, J.B.Wu, Z.Sommer, A.Speer, K.F.Perry, K.Stayrook, S.E.Fradkin, L.G.Lemmon, M.A.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Tyrosine-protein kinase transmembrane receptor DRL-2A162Drosophila melanogasterMutation(s): 0 
Gene Names: drl-2CG12463Dmel\CG3915dnlDNT-likedrl2CG3915Dmel_CG3915Drl-2DRL-2
UniProt
Find proteins for Q7JQT0 (Drosophila melanogaster)
Explore Q7JQT0 
Go to UniProtKB:  Q7JQT0
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NAG (Subject of Investigation/LOI)
Query on NAG

Download Ideal Coordinates CCD File 
B [auth A]2-acetamido-2-deoxy-beta-D-glucopyranose
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.230 
  • R-Value Observed: 0.232 
  • Space Group: C 2 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 56.978α = 90
b = 91.583β = 90
c = 76.362γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
SCALAdata scaling
PHASERphasing

Structure Validation

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Ligand Structure Quality Assessment  



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR35-GM122485

Revision History  (Full details and data files)

  • Version 1.0: 2021-10-13
    Type: Initial release