7M5F

Contact-dependent inhibition system from Serratia marcescens BWH57


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.59 Å
  • R-Value Free: 0.167 
  • R-Value Work: 0.140 
  • R-Value Observed: 0.142 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Contact-dependent inhibition system from Serratia marcescens

Michalska, K.Nutt, W.Stols, L.Jedrzejczak, R.Hayes, C.S.Joachimiak, A.Center for Structural Genomics of Infectious Diseases (CSGID)

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
CdiIA98Serratia marcescensMutation(s): 0 
Gene Names: DKC05_27250
UniProt
Find proteins for A0A5Q5EX61 (Serratia marcescens)
Explore A0A5Q5EX61 
Go to UniProtKB:  A0A5Q5EX61
Protein Feature View
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Toxin CdiAB [auth C]143Serratia marcescensMutation(s): 0 
Gene Names: SK68_03206
UniProt
Find proteins for A0A656UUJ3 (Serratia marcescens)
Explore A0A656UUJ3 
Go to UniProtKB:  A0A656UUJ3
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MLI
Query on MLI

Download Ideal Coordinates CCD File 
C [auth A], D [auth C], E [auth C]MALONATE ION
C3 H2 O4
OFOBLEOULBTSOW-UHFFFAOYSA-L
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
AL-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

Unit Cell:
Length ( Å )Angle ( ˚ )
a = 60.691α = 90
b = 97.241β = 90
c = 44.495γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-3000data reduction
HKL-3000data scaling
HKL-3000phasing

Structure Validation

View Full Validation Report




Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesHHSN272201700060C

Revision History  (Full details and data files)

  • Version 1.0: 2021-05-12
    Type: Initial release
  • Version 1.1: 2021-08-18
    Changes: Database references, Structure summary