7M3H | pdb_00007m3h

Targeting Enterococcus faecalis HMG-CoA reductase with a novel non-statin inhibitor

• PDB DOI: https://doi.org/10.2210/pdb7M3H/pdb

• Classification: ANTIBIOTIC
• Organism(s): Enterococcus faecalis
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2021-03-18 Released: 2022-09-21 
• Deposition Author(s): Bose, S., Steussy, C.N., Stauffacher, C.V.
• Funding Organization(s): National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI), National Institutes of Health/National Center for Research Resources (NIH/NCRR)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.27 Å
• R-Value Free: 
  0.166 (Depositor), 0.176 (DCC) 
• R-Value Work: 
  0.152 (Depositor) 
• R-Value Observed: 
  0.152 (Depositor) 

Starting Model: experimental

Literature

Targeting Enterococcus faecalis HMG-CoA reductase with a novel non-statin inhibitor

Bose, S., Steussy, C.N., Stauffacher, C.V.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 93.24 kDa 
• Atom Count: 7,552 
• Modeled Residue Count: 819 
• Deposited Residue Count: 846 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hydroxymethylglutaryl-CoA reductase, degradative	A, B	423	Enterococcus faecalis	Mutation(s): 0  Gene Names: EY666_03235 EC: 1.1.1.88 (PDB Primary Data), 2.3.1.9 (UniProt)
UniProt
Find proteins for A0A4U3MLJ4 (Enterococcus faecalis) Explore A0A4U3MLJ4  Go to UniProtKB:  A0A4U3MLJ4

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
YPV (Subject of Investigation/LOI)	C [auth A], E [auth B]	5-[(4-butylphenyl)sulfamoyl]-2-hydroxybenzoic acid C17 H19 N O5 S AJISVEXLPBAKLT-UHFFFAOYSA-N
SO4	D [auth A], F [auth B], G [auth B]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L
CA	H [auth B]	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.27 Å
• R-Value Free:  0.166 (Depositor), 0.176 (DCC) 
• R-Value Work:  0.152 (Depositor) 
• R-Value Observed: 0.152 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 72.503	α = 90
b = 81.126	β = 90
c = 152.974	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PDB_EXTRACT	data extraction
PHASER	phasing

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2022-09-21 
Deposition Author(s): Bose, S., Steussy, C.N., Stauffacher, C.V.

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Funding Organization	Location	Grant Number
National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)	United States	HL52115
National Institutes of Health/National Center for Research Resources (NIH/NCRR)	United States	MH082373

Revision History  

• Version 1.0: 2022-09-21
  Type: Initial release
  
• Version 1.1: 2023-10-18
  Changes: Data collection, Refinement description