7LJD

Allosteric modulator LY3154207 binding to dopamine-bound dopamine receptor 1 in complex with miniGs protein


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Mechanism of dopamine binding and allosteric modulation of the human D1 dopamine receptor.

Zhuang, Y.Krumm, B.Zhang, H.Zhou, X.E.Wang, Y.Huang, X.P.Liu, Y.Cheng, X.Jiang, Y.Jiang, H.Zhang, C.Yi, W.Roth, B.L.Zhang, Y.Xu, H.E.

(2021) Cell Res 31: 593-596


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
D(1A) dopamine receptorA [auth R]502Homo sapiensMutation(s): 0 
Gene Names: DRD1
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P21728 (Homo sapiens)
Explore P21728 
Go to UniProtKB:  P21728
PHAROS:  P21728
GTEx:  ENSG00000184845 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP21728
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Engineered Gs protein alpha subunitB [auth A]246Homo sapiensMutation(s): 0 
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P63092 (Homo sapiens)
Explore P63092 
Go to UniProtKB:  P63092
PHAROS:  P63092
GTEx:  ENSG00000087460 
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Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP63092
Sequence Annotations
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1C [auth B]353Rattus norvegicusMutation(s): 0 
Gene Names: Gnb1
UniProt
Find proteins for P54311 (Rattus norvegicus)
Explore P54311 
Go to UniProtKB:  P54311
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UniProt GroupP54311
Sequence Annotations
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2D [auth G]67Bos taurusMutation(s): 0 
Gene Names: GNG2
Membrane Entity: Yes 
UniProt
Find proteins for P63212 (Bos taurus)
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UniProt GroupP63212
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Nanobody 35E [auth N]135Lama glamaMutation(s): 0 
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  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
G4C (Subject of Investigation/LOI)
Query on G4C

Download Ideal Coordinates CCD File 
G [auth R]2-[2,6-bis(chloranyl)phenyl]-1-[(1S,3R)-3-(hydroxymethyl)-1-methyl-5-(3-methyl-3-oxidanyl-butyl)-3,4-dihydro-1H-isoquinolin-2-yl]ethanone
C24 H29 Cl2 N O3
XHCSBQBBGNQINS-DOTOQJQBSA-N
CLR
Query on CLR

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H [auth R],
I [auth R],
J [auth R],
K [auth R],
L [auth R]
CHOLESTEROL
C27 H46 O
HVYWMOMLDIMFJA-DPAQBDIFSA-N
PLM
Query on PLM

Download Ideal Coordinates CCD File 
M [auth R],
N [auth R],
O [auth R],
P [auth R]
PALMITIC ACID
C16 H32 O2
IPCSVZSSVZVIGE-UHFFFAOYSA-N
LDP
Query on LDP

Download Ideal Coordinates CCD File 
F [auth R]L-DOPAMINE
C8 H11 N O2
VYFYYTLLBUKUHU-UHFFFAOYSA-N
Binding Affinity Annotations 
IDSourceBinding Affinity
LDP BindingDB:  7LJD Ki: min: 7, max: 1.82e+4 (nM) from 29 assay(s)
Kd: 2500 (nM) from 1 assay(s)
IC50: min: 2, max: 1.00e+4 (nM) from 14 assay(s)
EC50: min: 20, max: 5000 (nM) from 10 assay(s)
G4C BindingDB:  7LJD EC50: min: 1.1, max: 62 (nM) from 5 assay(s)
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China81922071
National Natural Science Foundation of China (NSFC)China31770796
National Institutes of Health/National Institute of Mental Health (NIH/NIMH)United StatesRO1MH112205
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR35GM128641

Revision History  (Full details and data files)

  • Version 1.0: 2021-03-03
    Type: Initial release
  • Version 1.1: 2021-04-07
    Changes: Database references
  • Version 1.2: 2021-05-12
    Changes: Database references