7LBK

Crystal structure of human Survivin bound to histone H3 T3phK4me3 peptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.212 
  • R-Value Observed: 0.214 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Crystal structure of human Survivin bound to histone H3 T3phK4me3 peptide

Niedzialkowska, E.Minor, W.Stukenberg, P.T.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Baculoviral IAP repeat-containing protein 5C [auth A], A [auth B]146Homo sapiensMutation(s): 0 
Gene Names: BIRC5API4IAP4
UniProt & NIH Common Fund Data Resources
Find proteins for O15392 (Homo sapiens)
Explore O15392 
Go to UniProtKB:  O15392
PHAROS:  O15392
Protein Feature View
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  • Reference Sequence

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
histone H3 T3phK4me3 peptideD [auth C], B [auth D]12Homo sapiensMutation(s): 0 
Gene Names: 
UniProt & NIH Common Fund Data Resources
Find proteins for P68431 (Homo sapiens)
Explore P68431 
Go to UniProtKB:  P68431
PHAROS:  P68431
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download Ideal Coordinates CCD File 
E [auth B], F [auth A]ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  2 Unique
IDChainsTypeFormula2D DiagramParent
M3L
Query on M3L
B [auth D], D [auth C]L-PEPTIDE LINKINGC9 H21 N2 O2LYS
TPO
Query on TPO
B [auth D], D [auth C]L-PEPTIDE LINKINGC4 H10 N O6 PTHR
Experimental Data & Validation

Experimental Data

Unit Cell:
Length ( Å )Angle ( ˚ )
a = 114.292α = 90
b = 71.369β = 129.33
c = 82.554γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
HKL-3000data scaling
SCALEPACKdata scaling
HKL-3000data reduction
SHELXDphasing
DMphasing
MLPHAREphasing
HKL-3000phasing
BUCCANEERmodel building
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report




Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM053163

Revision History  (Full details and data files)

  • Version 1.0: 2022-01-12
    Type: Initial release