7L8V

NMR Structure of half-calcified calmodulin mutant (CaMEF12) bound to the IQ-motif of CaV1.2

  • Classification: METAL BINDING PROTEIN
  • Organism(s): Homo sapiens
  • Expression System: Escherichia coli
  • Mutation(s): Yes 

  • Deposited: 2021-01-01 Released: 2022-07-06 
  • Deposition Author(s): Ames, J.B.
  • Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), National Institutes of Health/National Eye Institute (NIH/NEI)

Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 40 
  • Conformers Submitted: 12 
  • Selection Criteria: structures with the least restraint violations 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Half-calcified calmodulin promotes basal activity and inactivation of the L-type calcium channel Ca V 1.2.

Bartels, P.Salveson, I.Coleman, A.M.Anderson, D.E.Jeng, G.Estrada-Tobar, Z.M.Man, K.N.M.Yu, Q.Kuzmenkina, E.Nieves-Cintron, M.Navedo, M.F.Horne, M.C.Hell, J.W.Ames, J.B.

(2022) J Biol Chem 298: 102701-102701

  • DOI: https://doi.org/10.1016/j.jbc.2022.102701
  • Primary Citation of Related Structures:  
    7L8V

  • PubMed Abstract: 

    The L-type Ca 2+ channel Ca V 1.2 controls gene expression, cardiac contraction, and neuronal activity. Calmodulin (CaM) governs Ca V 1.2 open probability (Po) and Ca 2+ -dependent inactivation (CDI) but the mechanisms remain unclear. Here, we present electrophysiological data that identify a half Ca 2+ -saturated CaM species (Ca 2 /CaM) with Ca 2+ bound solely at the third and fourth EF-hands (EF3 and EF4) under resting Ca 2+ concentrations (50-100 nM) that constitutively preassociates with Ca V 1.2 to promote Po and CDI. We also present an NMR structure of a complex between the Ca V 1.2 IQ motif (residues 1644-1665) and Ca 2 /CaM 12' , a calmodulin mutant in which Ca 2+ binding to EF1 and EF2 is completely disabled. We found that the CaM 12' N-lobe does not interact with the IQ motif. The CaM 12' C-lobe bound two Ca 2+ ions and formed close contacts with IQ residues I1654 and Y1657. I1654A and Y1657D mutations impaired CaM binding, CDI, and Po, as did disabling Ca 2+ binding to EF3 and EF4 in the CaM 34 mutant when compared to WT CaM. Accordingly, a previously unappreciated Ca 2 /CaM species promotes Ca V 1.2 Po and CDI, identifying Ca 2 /CaM as an important mediator of Ca signaling.


  • Organizational Affiliation

    Department of Pharmacology, University of California, Davis, California, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Calmodulin-1149Homo sapiensMutation(s): 8 
Gene Names: CALM1CALMCAMCAM1
UniProt & NIH Common Fund Data Resources
Find proteins for P0DP23 (Homo sapiens)
Explore P0DP23 
Go to UniProtKB:  P0DP23
PHAROS:  P0DP23
GTEx:  ENSG00000198668 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0DP23
Sequence Annotations
Expand
  • Reference Sequence

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Voltage-dependent L-type calcium channel subunit alpha-1CB [auth C]21Homo sapiensMutation(s): 0 
Gene Names: CACNA1CCACH2CACN2CACNL1A1CCHL1A1
UniProt & NIH Common Fund Data Resources
Find proteins for Q13936 (Homo sapiens)
Explore Q13936 
Go to UniProtKB:  Q13936
PHAROS:  Q13936
GTEx:  ENSG00000151067 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ13936
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
CA (Subject of Investigation/LOI)
Query on CA

Download Ideal Coordinates CCD File 
C [auth A],
D [auth A]
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 40 
  • Conformers Submitted: 12 
  • Selection Criteria: structures with the least restraint violations 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data

  • Released Date: 2022-07-06 
  • Deposition Author(s): Ames, J.B.

Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR01-GM130925
National Institutes of Health/National Eye Institute (NIH/NEI)United StatesR01-EY012347

Revision History  (Full details and data files)

  • Version 1.0: 2022-07-06
    Type: Initial release
  • Version 1.1: 2023-06-14
    Changes: Other
  • Version 1.2: 2024-01-17
    Changes: Data collection, Database references