7L79 | pdb_00007l79

Crystal structure of broadly HIV-1-neutralizing antibody VRC40.01

PDB DOI: https://doi.org/10.2210/pdb7L79/pdb

Classification: IMMUNE SYSTEM
Organism(s): Homo sapiens
Expression System: Homo sapiens
Mutation(s): No

Deposited: 2020-12-27 Released: 2021-10-27
Deposition Author(s): Zhou, T., Kwong, P.D.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.83 Å
R-Value Free:
0.280 (Depositor), 0.280 (DCC)
R-Value Work:
0.220 (Depositor), 0.220 (DCC)
R-Value Observed:
0.223 (Depositor)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of broadly HIV-1-neutralizing antibody

Zhou, T.

(2021) Cell Rep

Macromolecule Content

Total Structure Weight: 97.14 kDa
Atom Count: 6,885
Modeled Residue Count: 886
Deposited Residue Count: 888
Unique protein chains: 2

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Heavy chain of VRC40.01	A [auth H], C [auth A]	230	Homo sapiens	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Light chain of VRC40.01	B [auth L], D [auth B]	214	Homo sapiens	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ZN Query on ZN Download Ideal Coordinates CCD File SDF format, chain M [auth B] SDF format, chain L [auth B] SDF format, chain K [auth B] SDF format, chain J [auth L] SDF format, chain I [auth L] SDF format, chain H [auth L] SDF format, chain G [auth L] SDF format, chain F [auth L] SDF format, chain E [auth H] MOL2 format, chain M [auth B] MOL2 format, chain L [auth B] MOL2 format, chain K [auth B] MOL2 format, chain J [auth L] MOL2 format, chain I [auth L] MOL2 format, chain H [auth L] MOL2 format, chain G [auth L] MOL2 format, chain F [auth L] MOL2 format, chain E [auth H] mmCIF format, chain M [auth B] mmCIF format, chain L [auth B] mmCIF format, chain K [auth B] mmCIF format, chain J [auth L] mmCIF format, chain I [auth L] mmCIF format, chain H [auth L] mmCIF format, chain G [auth L] mmCIF format, chain F [auth L] mmCIF format, chain E [auth H]	E [auth H] F [auth L] G [auth L] H [auth L] I [auth L] E [auth H], F [auth L], G [auth L], H [auth L], I [auth L], J [auth L], K [auth B], L [auth B], M [auth B]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain E [auth H] Focus chain F [auth L] Focus chain G [auth L] Focus chain H [auth L] Focus chain I [auth L] Focus chain J [auth L] Focus chain K [auth B] Focus chain L [auth B] Focus chain M [auth B] Interactions & Density Focus chain E [auth H] Focus chain F [auth L] Focus chain G [auth L] Focus chain H [auth L] Focus chain I [auth L] Focus chain J [auth L] Focus chain K [auth B] Focus chain L [auth B] Focus chain M [auth B]