7L6Z

Crystal Structure of Peptidyl-Prolyl Cis-Trans Isomerasefrom (PpiB) Streptococcus pneumoniae R6

PDB DOI: https://doi.org/10.2210/pdb7L6Z/pdb

Classification: ISOMERASE
Organism(s): Streptococcus pneumoniae R6
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2020-12-24 Released: 2021-12-01
Deposition Author(s): Minasov, G., Shuvalova, L., Kiryukhina, O., Dubrovska, I., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.88 Å
R-Value Free: 0.212
R-Value Work: 0.173
R-Value Observed: 0.175

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Crystal Structure of Peptidyl-Prolyl Cis-Trans Isomerasefrom (PpiB) Streptococcus pneumoniae R6

Minasov, G., Shuvalova, L., Kiryukhina, O., Dubrovska, I., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published.

Macromolecule Content

Total Structure Weight: 241.01 kDa
Atom Count: 18,400
Modelled Residue Count: 2,132
Deposited Residue Count: 2,140
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Peptidyl-prolyl cis-trans isomerase	A, B, C, D, E A, B, C, D, E, F, G, H, I, J	214	Streptococcus pneumoniae R6	Mutation(s): 0 Gene Names: ppiA, spr0679 EC: 5.2.1.8
UniProt
Find proteins for Q8DQG5 (Streptococcus pneumoniae (strain ATCC BAA-255 / R6)) Explore Q8DQG5 Go to UniProtKB: Q8DQG5
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q8DQG5
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
MES Query on MES Download Ideal Coordinates CCD File SDF format, chain P [auth C] SDF format, chain Q [auth C] SDF format, chain S [auth D] SDF format, chain U [auth E] SDF format, chain V [auth F] SDF format, chain W [auth F] SDF format, chain Y [auth H] SDF format, chain Z [auth J] MOL2 format, chain P [auth C] MOL2 format, chain Q [auth C] MOL2 format, chain S [auth D] MOL2 format, chain U [auth E] MOL2 format, chain V [auth F] MOL2 format, chain W [auth F] MOL2 format, chain Y [auth H] MOL2 format, chain Z [auth J]	P [auth C] Q [auth C] S [auth D] U [auth E] V [auth F] P [auth C], Q [auth C], S [auth D], U [auth E], V [auth F], W [auth F], Y [auth H], Z [auth J]	2-(N-MORPHOLINO)-ETHANESULFONIC ACID C₆ H₁₃ N O₄ S SXGZJKUKBWWHRA-UHFFFAOYSA-N		Interactions Focus chain P [auth C] Focus chain Q [auth C] Focus chain S [auth D] Focus chain U [auth E] Focus chain V [auth F] Focus chain W [auth F] Focus chain Y [auth H] Focus chain Z [auth J]
EDO Query on EDO Download Ideal Coordinates CCD File SDF format, chain M [auth A] MOL2 format, chain M [auth A]	M [auth A]	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Interactions Focus chain M [auth A]
CL Query on CL Download Ideal Coordinates CCD File SDF format, chain K [auth A] SDF format, chain T [auth E] SDF format, chain L [auth A] SDF format, chain N [auth B] SDF format, chain O [auth B] SDF format, chain R [auth D] SDF format, chain X [auth G] MOL2 format, chain K [auth A] MOL2 format, chain T [auth E] MOL2 format, chain L [auth A] MOL2 format, chain N [auth B] MOL2 format, chain O [auth B] MOL2 format, chain R [auth D] MOL2 format, chain X [auth G]	K [auth A] L [auth A] N [auth B] O [auth B] R [auth D] K [auth A], L [auth A], N [auth B], O [auth B], R [auth D], T [auth E], X [auth G]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Interactions Focus chain K [auth A] Focus chain L [auth A] Focus chain N [auth B] Focus chain O [auth B] Focus chain R [auth D] Focus chain T [auth E] Focus chain X [auth G]