7KRZ

Human mitochondrial LONP1 in complex with Bortezomib

PDB DOI: 10.2210/pdb7KRZ/pdb
EM Map EMD-23013:EMDB EMDataResource

Classification: HYDROLASE
Organism(s): Homo sapiens, Escherichia coli BL21(DE3)
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2020-11-20 Released: 2021-02-24
Deposition Author(s): Shin, M., Watson, E.R., Song, A.S., Mindrebo, J.T., Novick, S.R., Griffin, P., Wiseman, R.L., Lander, G.C.
Funding Organization(s): National Institutes of Health/National Institute on Aging (NIH/NIA), National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS), National Institutes of Health/Office of the Director

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.20 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Human mitochondrial LONP1 in complex with Bortezomib

Shin, M., Watson, E.R., Song, A.S., Mindrebo, J.T., Novick, S.R., Griffin, P., Wiseman, R.L., Lander, G.C.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Lon protease homolog, mitochondrial	A, B, C, D, E, F A, B, C, D, E, F	534	Homo sapiens	Mutation(s): 0 Gene Names: LONP1, PRSS15 EC: 3.4.21.53
UniProt & NIH Common Fund Data Resources
Find proteins for P36776 (Homo sapiens) Explore P36776 Go to UniProtKB: P36776
PHAROS: P36776 GTEx: ENSG00000196365
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P36776
Protein Feature View Expand
Reference Sequence

Find similar proteins by: Sequence | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Endogenous co-purified substrate	G	12	Escherichia coli BL21(DE3)	Mutation(s): 0
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ATP Query on ATP Download Ideal Coordinates CCD File SDF format, chain H [auth A] SDF format, chain K [auth B] SDF format, chain N [auth C] SDF format, chain Q [auth D] MOL2 format, chain H [auth A] MOL2 format, chain K [auth B] MOL2 format, chain N [auth C] MOL2 format, chain Q [auth D]	H [auth A], K [auth B], N [auth C], Q [auth D]	ADENOSINE-5'-TRIPHOSPHATE C₁₀ H₁₆ N₅ O₁₃ P₃ ZKHQWZAMYRWXGA-KQYNXXCUSA-N		Ligand Interaction
ADP Query on ADP Download Ideal Coordinates CCD File SDF format, chain T [auth E] SDF format, chain V [auth F] MOL2 format, chain T [auth E] MOL2 format, chain V [auth F]	T [auth E], V [auth F]	ADENOSINE-5'-DIPHOSPHATE C₁₀ H₁₅ N₅ O₁₀ P₂ XTWYTFMLZFPYCI-KQYNXXCUSA-N		Ligand Interaction
BO2 Query on BO2 Download Ideal Coordinates CCD File SDF format, chain P [auth C] SDF format, chain J [auth A] SDF format, chain M [auth B] SDF format, chain S [auth D] SDF format, chain U [auth E] SDF format, chain W [auth F] MOL2 format, chain P [auth C] MOL2 format, chain J [auth A] MOL2 format, chain M [auth B] MOL2 format, chain S [auth D] MOL2 format, chain U [auth E] MOL2 format, chain W [auth F]	J [auth A], M [auth B], P [auth C], S [auth D], U [auth E], J [auth A], M [auth B], P [auth C], S [auth D], U [auth E], W [auth F]	N-[(1R)-1-(DIHYDROXYBORYL)-3-METHYLBUTYL]-N-(PYRAZIN-2-YLCARBONYL)-L-PHENYLALANINAMIDE C₁₉ H₂₅ B N₄ O₄ GXJABQQUPOEUTA-RDJZCZTQSA-N		Ligand Interaction
MG Query on MG Download Ideal Coordinates CCD File SDF format, chain O [auth C] SDF format, chain I [auth A] SDF format, chain L [auth B] SDF format, chain R [auth D] MOL2 format, chain O [auth C] MOL2 format, chain I [auth A] MOL2 format, chain L [auth B] MOL2 format, chain R [auth D]	I [auth A], L [auth B], O [auth C], R [auth D]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.20 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Deposited Date: 2020-11-20
Released Date: 2021-02-24

Deposition Author(s):

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute on Aging (NIH/NIA)	United States	AG067594
National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS)	United States	NS095892
National Institutes of Health/National Institute on Aging (NIH/NIA)	United States	AG061697
National Institutes of Health/Office of the Director	United States	S10OD021634