7KMQ

Crystal structure of the GH95 alpha-L-1,2-fucosidase (Xac1774) from Xanthomonas citri


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.04 Å
  • R-Value Free: 0.191 
  • R-Value Work: 0.174 
  • R-Value Observed: 0.175 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Xyloglucan processing machinery in Xanthomonas pathogens and its role in the transcriptional activation of virulence factors

Vieira, P.S.Bonfim, I.M.Araujo, E.A.Melo, R.R.Lima, A.R.Fessel, M.R.Paixao, D.A.A.Persinoti, G.F.Rocco, S.A.Lima, T.B.Pirolla, R.A.S.Morais, M.A.B.Correa, J.B.L.Zanphorlin, L.M.Diogo, J.A.Lima, E.A.Grandis, A.Buckeridge, M.S.Gozzo, F.C.Benedetti, C.E.Polikarpov, I.Giuseppe, P.O.Murakami, M.T.

(2021) Nature Communications 12: 4049


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Glyco_hyd_65N_2 domain-containing proteinA, B786Xanthomonas citri pv. citri str. 306Mutation(s): 0 
Gene Names: XAC1774
UniProt
Find proteins for Q8PLM1 (Xanthomonas axonopodis pv. citri (strain 306))
Explore Q8PLM1 
Go to UniProtKB:  Q8PLM1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8PLM1
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.04 Å
  • R-Value Free: 0.191 
  • R-Value Work: 0.174 
  • R-Value Observed: 0.175 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 103.6α = 90
b = 103.52β = 90
c = 173.4γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XSCALEdata scaling
PDB_EXTRACTdata extraction
XDSdata reduction
PHASERphasing

Structure Validation

View Full Validation Report




Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Sao Paulo Research Foundation (FAPESP)Brazil2016/06509-0
Sao Paulo Research Foundation (FAPESP)Brazil2015/26982-0

Revision History  (Full details and data files)

  • Version 1.0: 2021-05-26
    Type: Initial release
  • Version 1.1: 2021-07-07
    Changes: Database references