7KIS

Crystal structure of Pseudomonas aeruginosa PBP2 in complex with WCK 5153


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.87 Å
  • R-Value Free: 0.317 
  • R-Value Work: 0.258 
  • R-Value Observed: 0.261 

wwPDB Validation   3D Report Full Report



Literature

Structural characterization of diazabicyclooctane beta-lactam 'enhancers' in complex with penicillin-binding proteins PBP2 and PBP3 of Pseudomonas aeruginosa

Rajavel, M.Kumar, V.Nguyen, H.Wyatt, J.Marshall, S.H.Papp-Wallace, K.M.Deshpande, P.Bhavsar, S.Yeole, R.Bhagwat, S.Patel, M.Bonomo, R.A.van den Akker, F.

(2020) mBio 


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Peptidoglycan D,D-transpeptidase MrdAAB646Pseudomonas aeruginosaMutation(s): 0 
Gene Names: 
EC: 3.4.16.4
Find proteins for Q9X6V3 (Pseudomonas aeruginosa)
Explore Q9X6V3 
Go to UniProtKB:  Q9X6V3
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
C9D
Query on C9D

Download Ideal Coordinates CCD File 
A, B
(2S,5R)-1-formyl-N'-[(3R)-pyrrolidine-3-carbonyl]-5-[(sulfooxy)amino]piperidine-2-carbohydrazide
C12 H21 N5 O7 S
MPNPDELHXLJIKQ-BBBLOLIVSA-N
 Ligand Interaction
CL
Query on CL

Download Ideal Coordinates CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.87 Å
  • R-Value Free: 0.317 
  • R-Value Work: 0.258 
  • R-Value Observed: 0.261 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 82.018α = 90
b = 75.924β = 106.73
c = 97.299γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
XDSdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2021-01-13
    Type: Initial release